Center publications

2019
  1. Nuñez-Lillo, G., Balladares, C., Pavez, C., Urra, C., Sanhueza, D., Vendramin, E., Dettori, M. T., Arús, P., Verde, I., Blanco-Herrera, F., Campos-Vargas, R., and Meneses, C. 2019. High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing. Sci. Hortic. (Amsterdam). 257:108734 [Article]​
  2. Oporto, C. I., Villarroel, C. A., Tapia, S. M., Garcia, V., and Cubillos, F. A. 2019. Distinct Transcriptional Changes in Response to Patulin Underlie Toxin Biosorption Differences in Saccharomyces Cerevisiae. Toxins (Basel). 11 [Article]​
  3. Molinet, J., Cubillos, F. A., Salinas, F., Liti, G., and Martinez, C. 2019. Genetic variants of TORC1 signaling pathway affect nitrogen consumption in Saccharomyces cerevisiae during alcoholic fermentation. PLoS One. 14:e0220515 [Article]​
  4. Kessi-Perez, E. I., Salinas, F., Gonzalez, A., Su, Y., Guillamon, J. M., Hall, M. N., Larrondo, L. F., and Martinez, C. 2019. KAE1 Allelic Variants Affect TORC1 Activation and Fermentation Kinetics in Saccharomyces cerevisiae. Front. Microbiol. 10:1686 [Article]​
  5. Alvarez, J. M., Moyano, T. C., Zhang, T., Gras, D. E., Herrera, F. J., Araus, V., O’Brien, J. A., Carrillo, L., Medina, J., Vicente-Carbajosa, J., Jiang, J., and Gutiérrez, R. A. 2019. Local changes in chromatin accessibility and transcriptional networks underlying the nitrate response in Arabidopsis roots. Mol. Plant. [Article]​
  6. Pérez-Palma, E., Bustos, B. I., Lal, D., Buch, S., Azocar, L., Toliat, M. R., Lieb, W., Franke, A., Hinz, S., Burmeister, G., von Shönfels, W., Schafmayer, C., Ahnert, P., Völzke, H., Völker, U., Homuth, G., Lerch, M. M., Puschel, K.,Gutiérrez, R. A.,Hampe, J., Nürnberg, P., Francisco Miquel, J., and De Ferrari, G. V. 2019. Copy number variants in lipid metabolism genes are associated with gallstones disease in men. Eur. J. Hum. Genet. [Article]​
  7. Naulin PA, Armijo G, Vega A, Tamayo KP, Gras DE, de la Cruz J, and Gutiérrez, R. A.(2019) Nitrate induction of primary root growth requires cytokinin signaling in Arabidopsis thaliana. Plant Cell Phys. Accepted. [Article]​
  8. Wood JR, Díaz FP, Latorre C, Wilmshurst JM, Burge OR, Gutiérrez RA(2019). Ancient parasite DNA from late Quaternary Atacama Desert rodent middens. Quat. Sci Rev. Accepted. [Article]​
  9. Alvarez JM, Moyano TC, Zhang T, Gras DE, Herrera FJ, Araus V, O’Brien JA, Jiang J and Gutiérrez, R. A.(2019). The transcriptional landscape of the nitrate response of Arabidopsis roots. Mol. Plant. Accepted.
  10. Pollak, B., Cerda, A., Delmans, M., Alamos, S., Moyano, T., West, A., Gutierrez, R. A.,Patron, N. J., Federici, F.,and Haseloff, J. 2019. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytol. 222:628–640 [Article]​Nuñez-Lillo, G., Balladares, C., Pavez, C., Urra, C., Sanhueza, D., Vendramin, E., Dettori, M. T., Arús, P., Verde, I., Blanco-Herrera, F., Campos-Vargas, R., and Meneses, C. 2019. High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing. Sci. Hortic. (Amsterdam). 257:108734 [Article]​
  11. Bustos, B. I., Perez-Palma, E., Buch, S., Azocar, L., Riveras, E., Ugarte, G. D., Toliat, M., Nurnberg, P., Lieb, W., Franke, A., Hinz, S., Burmeister, G., von Schonfels, W., Schafmayer, C., Volzke, H., Volker, U., Homuth, G., Lerch, M. M., Santos, J. L., Puschel, K., Bambs, C., Roa, J. C., Gutierrez, R. A.,Hampe, J., De Ferrari, G. V, and Miquel, J. F. 2019. Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry. Sci. Rep. 9:772 [Article]​
  12. Fernandez-Gomez, B., Maldonado, J., Mandakovic, D., Gaete, A., Gutierrez, R. A., Maass, A., Cambiazo, V., and Gonzalez, M. 2019. Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils. Sci. Rep. 9:1042 [Article]​
  13. Diaz, F. P., Latorre, C., Carrasco-Puga, G., Wood, J. R., Wilmshurst, J. M., Soto, D. C., Cole, T. L., and Gutierrez, R. A. 2019. Multiscale climate change impacts on plant diversity in the Atacama Desert. Glob. Chang. Biol. 25:1733–1745 [Article]​
  14. Vidal, E. A., Moyano, T. C., Bustos, B. I., Perez-Palma, E., Moraga, C., Riveras, E., Montecinos, A., Azocar, L., Soto, D. C., Vidal, M., Di Genova, A., Puschel, K., Nurnberg, P., Buch, S., Hampe, J., Allende, M. L., Cambiazo, V., Gonzalez, M., Hodar, C., Montecino, M., Munoz-Espinoza, C., Orellana, A., Reyes-Jara, A., Travisany, D., Vizoso, P., Moraga, M., Eyheramendy, S., Maass, A., De Ferrari, G. V, Miquel, J. F., and Gutierrez, R. A.  2019. Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans. Sci. Rep. 9:2132[Article]​
  15. Brooks, M. D., Cirrone, J., Pasquino, A. V, Alvarez, J. M., Swift, J., Mittal, S., Juang, C.-L., Varala, K., Gutierrez, R. A., Krouk, G., Shasha, D., and Coruzzi, G. M. 2019. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nat. Commun. 10:1569 [Article]​
  16. Kessi-Perez, E. I., Salinas, F.,Molinet, J., Gonzalez, A., Muniz, S., Guillamon, J. M., Hall, M. N., Larrondo, L. F., and Martinez, C. 2019. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. 36:65–74 [Article]​
  17. Cubillos, F. A., Gibson, B., Grijalva-Vallejos, N., Krogerus, K., and Nikulin, J. 2019. Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers. Yeast. [Article]​
  18. Fredes, I., Moreno, S., Diaz, F. P., and Gutierrez, R. A.2019. Nitrate signaling and the control of Arabidopsis growth and development. Curr. Opin. Plant Biol. 47:112–118 [Article]​
  19. Falter-Braun, P., Brady, S., Gutierrez, R. A., Coruzzi, G. M., and Krouk, G. 2019. iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community. Mol. Plant. 12:727–730 [Article]​
  20. Ramírez-Cáceres, G. E., Moya-Hernández, M. G., Quilodrán, M., Nespolo, R. F., Ceballos, R., Villagra, C. A., and Ramírez, C. C. 2019. Harbouring the secondary endosymbiont Regiella insecticola increases predation risk and reproduction in the cereal aphid Sitobion avenae. J. Pest Sci. (2004). 92:1039–1047 [Article]​
  21. Salazar, M. P., Valenzuela, D., Tironi, M., and Gutiérrez, R. A. 2019. The ambivalent regulator: the construction of a regulatory style for genetically modified crops in Chile. Tapuya Lat. Am. Sci. Technol. Soc. 0:1–21 [Article]​
  22. Silva-Sanzana, C., Celiz-Balboa, J., Garzo, E., Marcus, S. E., Parra-Rojas, J. P., Rojas, B., Olmedo, P., Rubilar Romero, M. A., Rios, I., Chorbadjian, R. A., Fereres, A., Knox, J. P., Saez-Aguayo, S., and Blanco-Herrera, F. 2019. Pectinmethyesterases Modulate Plant Homogalacturonan Status in Defenses Against the Aphid Myzus persicae. Plant Cell. [Article]​
2018
  1. Wood, J. R., Diaz, F. P., Latorre, C., Wilmshurst, J. M., Burge, O. R., and Gutierrez, R. A. 2018. Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile. Sci. Rep. 8:17208 [Article]​
  2. Khan, A., Montenegro-Montero, A.,and Mathelier, A. 2018. Put science first and formatting later. EMBO Rep. 19 [Article]​
  3. Castillo, F. M., Canales, J.,Claude, A., and Calderini, D. F. 2018. Expansin genes expression in growing ovaries and grains of sunflower are tissue-specific and associate with final grain weight. BMC Plant Biol. 18:327 [Article]​
  4. Canales, J.,Henriquez-Valencia, C., and Brauchi, S. 2017. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8:2173 [Article]​
  5. Arraño-Salinas, P., Domínguez-Figueroa, J., Herrera-Vásquez, A., Zavala, D., Medina, J., Vicente-Carbajosa, J., Meneses, C., Canessa, P., Moreno, A. A., and Blanco-Herrera, F. 2018. WRKY7, -11 and -17 transcription factors are modulators of the bZIP28 branch of the unfolded protein response during PAMP-triggered immunity in Arabidopsis thaliana. Plant Sci. :0–1 [Article]​
  6. Brice C, Cubillos FA, Dequin S, Camarasa C, Martínez C 2018. Adaptability of the Saccharomyces cerevisiaeyeasts to wine fermentation conditions relies on their strong ability to consume nitrogen. PLoS2018 Feb 12;13(2):e0192383. doi: 10.1371/journal.pone.0192383. eCollection 2018.[Pubmed]
  7. Boni, A. C., Ambrósio, D. L., Cupertino, F. B., Montenegro-Montero, A., Virgilio, S., Freitas, F. Z., Corrocher, F. A., Gonçalves, R. D., Yang, A., Weirauch, M. T., Hughes, T. R., Larrondo, L. F., and Bertolini, M. C. 2018. Neurospora crassa developmental control mediated by the FLB-3 transcription factor. Fungal Biol. 122:570–582  [Article]​
  8. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2018. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8  [Article]​
  9. Cifuentes-Esquivel, N., Celiz-Balboa, J., Henriquez-Valencia, C., Mitina, I., Arraño-Salinas, P., Moreno, A. A., Meneses, C., Blanco-Herrera, F., and Orellana, A. 2018. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem. 119:6857–6868  [Article]​
  10. Contreras-López, O., Moyano, T. C., Soto, D. C., and Gutiérrez, R. A. 2018. Step-by-step construction of gene co-expression networks from high-throughput Arabidopsis RNA sequencing data. Methods Mol. Biol. 1761:275–301  [Article]​
  11. Henríquez-Valencia, C., Arenas-M, A., Medina, J., and Canales, J. 2018. Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana. Front. Plant Sci. 9:1–20  [Article]​
  12. Kan, A., Del Valle, I., Rudge, T., Federici, F., and Haseloff, J. 2018. Intercellular adhesion promotes clonal mixing in growing bacterial populations. J. R. Soc. Interface. 15:20180406  [Article]​
  13. Kessi-Pérez, E. I., Salinas, F., Molinet, J., González, A., Muñiz, S., Guillamón, J. M., Hall, M. N., Larrondo, L. F., and Martínez, C. 2018. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast.  [Article]​
  14. Larrondo, L., and Canessa, P. 2018. The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis Luis. in: Current Topics in Microbiology and Immunology,  [Article]​
  15. Mandakovic, D., Rojas, C., Maldonado, J., Latorre, M., Travisany, D., Delage, E., Bihouée, A., Jean, G.,  Díaz, F. P.,  Fernández-Gómez, B., Cabrera, P., Gaete, A., Latorre, C.,  Gutiérrez, R. A., Maass, A.,  Cambiazo, V.,  Navarrete, S. A.,  Eveillard, D.,  González, M. 2018. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci. Rep. 8:5875  [Article]​
  16. Muñoz-Llanos, M., García-Pérez, M. A., Xu, X., Tejos-Bravo, M., Vidal, E. A., Moyano, T. C., Gutiérrez, R. A., Aguayo, F. I., Pacheco, A., García-Rojo, G., Aliaga, E., Rojas, P. S., Cidlowski, J. A., and Fiedler, J. L. 2018. MicroRNA Profiling and Bioinformatics Target Analysis in Dorsal Hippocampus of Chronically Stressed Rats: Relevance to Depression Pathophysiology. Front. Mol. Neurosci. 11:1–18  [Article]​
  17. Nespolo, R., Gaitán-Espitia, J., Quintero-Galvis, J., Fernandez, F., Silva, A., Molina, C., Storey, K., and Bozinovic, F. 2018. A functional transcriptomics analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of hibernation. Mol. Ecol. 10:1–3  [Article]​
  18. Quintero-Galvis, J. F., Paleo-López, R., Solano-Iguaran, J. J., Poupin, M. J., Ledger, T., Gaitan- Espitia, J. D., Antoł, A., Travisano, M., and Nespolo, R. F. 2018. Exploring the evolution of multicellularity in Saccharomyces cerevisiae under bacteria environment: An experimental phylogenetics approach. Ecol. Evol. 8:4619–4630  [Article]​
  19. Rojas-Aedo, J. F., Gil-Durán, C., Goity, A., Vaca, I., Levicán, G., Larrondo, L. F., and Chávez, R. 2018. The developmental regulator Pcz1 affects the production of secondary metabolites in the filamentous fungus Penicillium roqueforti. Microbiol. Res. 212–213:67–74  [Article]​
  20. Salinas-Grenet, H., Herrera-Vásquez, A., Parra, S., Cortez, A., Gutiérrez, L., Pollmann, S., León, G., and Blanco-Herrera, F. 2018. Modulation of auxin levels in pollen grains affects stamen development and anther dehiscence in Arabidopsis. Int. J. Mol. Sci. 19:1–13  [Article]​
  21. Salinas, F., Rojas, V., Delgado, V., López, J., Agosin, E., and Larrondo, L. F. 2018. Fungal Light-Oxygen-Voltage Domains for Optogenetic Control of Gene Expression and Flocculation in Yeast. MBio. 9:e00626-18  [Article]​
  22. Tapia, S. M., Cuevas, M., Abarca, V., Delgado, V., Rojas, V., García, V., Brice, C., Martínez, C., Salinas, F., Larrondo, L. F., and Cubillos, F. A. 2018. GPD1 and ADH3 natural variants underlie glycerol yield differences in wine fermentation. Front. Microbiol. 9:1–13 [Article]​
  23. Zúñiga, A., Fuente, F. D. La, Federici, F., Lionne, C., Bônnet, J., De Lorenzo, V., and González, B. 2018. An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 to Stimulate Plant Growth. ACS Synth. Biol. 7:1519–1527 [Article​]