Publicaciones del Centro

2022

1. 1. 1. 1. Darriere, T, E Jobet, D Zavala, M L Escande, N Durut, A de Bures, F Blanco-Herrera, et al. “Upon Heat Stress Processing of Ribosomal RNA Precursors into Mature RRNAs Is Compromised after Cleavage at Primary P Site in Arabidopsis Thaliana.” RNA Biology 19, no. 1 (2022): 719–34. https://doi.org/10.1080/15476286.2022.2071517.
         2. Di Genova, Alex, Gino Nardocci, Rodrigo Maldonado-Agurto, Christian Hodar, Camilo Valdivieso, Pamela Morales, Felipe Gajardo, et al. “Genome Sequencing and Transcriptomic Analysis of the Andean Killifish Orestias Ascotanensis Reveals Adaptation to High-Altitude Aquatic Life.” Genomics 114, no. 1 (2022): 305–15. https://doi.org/10.1016/j.ygeno.2021.12.018.
         3. Dussarrat, Thomas, Sylvain Prigent, Claudio Latorre, Stéphane Bernillon, Amélie Flandin, Francisca P Díaz, Cédric Cassan, et al. “Predictive Metabolomics of Multiple Atacama Plant Species Unveils a Core Set of Generic Metabolites for Extreme Climate Resilience.” New Phytologist 234, no. 5 (June 2022): 1614–28. https://doi.org/10.1111/nph.18095.
         4. Espinosa, Rodrigo, Karla Gutiérrez, Javiera Rios, Fernando Ormeño, Liliana Yantén, Pablo Galaz-Davison, César A Ramírez-Sarmiento, et al. “Palmitic and Stearic Acids Inhibit Chaperone-Mediated Autophagy (CMA) in POMC-like Neurons In Vitro.” Cells 11, no. 6 (2022). https://doi.org/10.3390/cells11060920.
         5. Feng, Shaohong, Ming Bai, Iker Rivas-González, Cai Li, Shiping Liu, Yijie Tong, Haidong Yang, et al. “Incomplete Lineage Sorting and Phenotypic Evolution in Marsupials.” Cell 185, no. 10 (2022): 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034.
         6. Fontúrbel, Francisco E, Lida M Franco, Francisco Bozinovic, Julian F Quintero-Galvis, Carlos Mejías, Guillermo C Amico, M Soledad Vazquez, et al. “The Ecology and Evolution of the Monito Del Monte, a Relict Species from the Southern South America Temperate Forests.” Ecology and Evolution 12, no. 3 (2022): e8645–e8645. https://doi.org/10.1002/ece3.8645.
         7. Galaz-Davison, Pablo, Diego U Ferreiro, and César A Ramírez-Sarmiento. “Coevolution-Derived Native and Non-Native Contacts Determine the Emergence of a Novel Fold in a Universally Conserved Family of Transcription Factors.” Protein Science 31, no. 6 (2022): e4337–e4337. https://doi.org/10.1002/pro.4337.
         8. Guzman-Chavez, Fernando, Anibal Arce, Abhinav Adhikari, Sandra Vadhin, Jose Antonio Pedroza-Garcia, Chiara Gandini, Jim W Ajioka, et al. “Constructing Cell-Free Expression Systems for Low-Cost Access.” ACS Synthetic Biology 11, no. 3 (March 2022): 1114–28. https://doi.org/10.1021/acssynbio.1c00342.
         9. Isabel, Fuenzalida-Valdivia, Gangas Maria Victoria, Zavala Diego, Herrera-Vásquez Ariel, Roux Fabrice, Meneses Claudio, Blanco-Herrera Francisca, and Baltrus David A. “Draft Genome Sequence of Pseudomonas Syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis Thaliana Plants.” Microbiology Resource Announcements 11, no. 1 (June 2022): e01001-21. https://doi.org/10.1128/mra.01001-21.
         10. Lamig, Liliana, Sebastián Moreno, José M Álvarez, and Rodrigo A Gutiérrez. “Molecular Mechanisms Underlying Nitrate Responses in Plants.” Current Biology 32, no. 9 (2022): R433–39. https://doi.org/10.1016/j.cub.2022.03.022.
         11. Maldonado, Jonathan E, Alexis Gaete, Dinka Mandakovic, Constanza Aguado-Norese, Melissa Aguilar, Rodrigo A Gutiérrez, and Mauricio González. “Partners to Survive: Hoffmannseggia Doellii Root-Associated Microbiome at the Atacama Desert.” New Phytologist 234, no. 6 (June 2022): 2126–39. https://doi.org/10.1111/nph.18080.
         12. Mardones, Wladimir, Carlos A Villarroel, Valentina Abarca, Kamila Urbina, Tomás A Peña, Jennifer Molinet, Roberto F Nespolo, and Francisco A Cubillos. “Rapid Selection Response to Ethanol in Saccharomyces Eubayanus Emulates the Domestication Process under Brewing Conditions.” Microbial Biotechnology 15, no. 3 (2022): 967–84. https://doi.org/10.1111/1751-7915.13803.
         13. Marzol, Eliana, Cecilia Borassi, Mariana Carignani Sardoy, Philippe Ranocha, Ariel A Aptekmann, Mauro Bringas, Janice Pennington, et al. “Class III Peroxidases PRX01, PRX44, and PRX73 Control Root Hair Growth in Arabidopsis Thaliana.” International Journal of Molecular Sciences 23, no. 10 (2022). https://doi.org/10.3390/ijms23105375.
         14. Mejias, Carlos, Juan G Navedo, Pablo Sabat, Lida M Franco, Francisco Bozinovic, and Roberto F Nespolo. “Body Composition and Energy Savings by Hibernation: Lessons from the South American Marsupial Dromiciops Gliroides.” Physiological and Biochemical Zoology 95, no. 3 (2022): 239–50. https://doi.org/10.1086/719932.
         15. Molina, José Alejandro, Pablo Galaz-Davison, Elizabeth A Komives, Irina Artsimovitch, and César A Ramírez-Sarmiento. “Allosteric Couplings upon Binding of RfaH to Transcription Elongation Complexes.” Nucleic Acids Research, June 2022. https://doi.org/10.1093/nar/gkac453.
         16. Molinet, Jennifer, Kamila Urbina, Claudia Villegas, Valentina Abarca, Christian I Oporto, Pablo Villarreal, Carlos A Villarroel, Francisco Salinas, Roberto F Nespolo, and Francisco A Cubillos. “A Saccharomyces Eubayanus Haploid Resource for Research Studies.” Scientific Reports 12, no. 1 (2022): 5976–5976. https://doi.org/10.1038/s41598-022-10048-8.
         17. Mozzachiodi, Simone, Feng-Yan Bai, Petr Baldrian, Graham Bell, Kyria Boundy-Mills, Pietro Buzzini, Neža ?adež, et al. “Yeasts from Temperate Forests.” Yeast 39, no. 1–2 (January 2022): 4–24. https://doi.org/10.1002/yea.3699.
         18. Nespolo, Roberto F, Francisco E Fontúrbel, Carlos Mejias, Rodrigo Contreras, Paulina Gutierrez, Esteban Oda, Pablo Sabat, Catherine Hambly, John R Speakman, and Francisco Bozinovic. “A Mesocosm Experiment in Ecological Physiology: The Modulation of Energy Budget in a Hibernating Marsupial under Chronic Caloric Restriction.” Physiological and Biochemical Zoology 95, no. 1 (2022): 66–81. https://doi.org/10.1086/717760.
         19. Nespolo, Roberto F, Carlos Mejias, and Francisco Bozinovic. “Why Bears Hibernate? Redefining the Scaling Energetics of Hibernation.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1973 (2022): 20220456–20220456. https://doi.org/10.1098/rspb.2022.0456.
         20. Orlando, Contreras-López, Vidal Elena A, Riveras Eleodoro, Alvarez José M, Moyano Tomás C, Sparks Erin E, Medina Joaquín, et al. “Spatiotemporal Analysis Identifies ABF2 and ABF3 as Key Hubs of Endodermal Response to Nitrate.” Proceedings of the National Academy of Sciences 119, no. 4 (January 2022): e2107879119–e2107879119. https://doi.org/10.1073/pnas.2107879119.
         21. Pacheco, Javier Martínez, Philippe Ranocha, Luciana Kasulin, Corina M Fusari, Lucas Servi, Ariel. A Aptekmann, Victoria Berdion Gabarain, et al. “Apoplastic Class III Peroxidases PRX62 and PRX69 Promote Arabidopsis Root Hair Growth at Low Temperature.” Nature Communications 13, no. 1 (2022): 1310–1310. https://doi.org/10.1038/s41467-022-28833-4.
         22. Paula, Blázquez-Sánchez, Engelberger Felipe, Cifuentes-Anticevic Jerónimo, Sonnendecker Christian, Griñén Aransa, Reyes Javiera, Díez Beatriz, et al. “Antarctic Polyester Hydrolases Degrade Aliphatic and Aromatic Polyesters at Moderate Temperatures.” Applied and Environmental Microbiology 88, no. 1 (June 2022): e01842-21. https://doi.org/10.1128/AEM.01842-21.
         23. Quintero-Galvis, Julian F, Pablo Saenz-Agudelo, Guillermo C Amico, Soledad Vazquez, Aaron B A Shafer, and Roberto F Nespolo. “Genomic Diversity and Demographic History of the Dromiciops Genus (Marsupialia: Microbiotheriidae).” Molecular Phylogenetics and Evolution 168 (2022): 107405–107405. https://doi.org/10.1016/j.ympev.2022.107405.
         24. Rivera, Maira, Pablo Galaz-Davison, Ignacio Retamal-Farfán, Elizabeth A Komives, and César A Ramírez-Sarmiento. “Dimer Dissociation Is a Key Energetic Event in the Fold-Switch Pathway of KaiB.” Biophysical Journal 121, no. 6 (2022): 943–55. https://doi.org/10.1016/j.bpj.2022.02.012.
         25. Rojas, Vicente, Francisco Salinas, Andrés Romero, Luis F Larrondo, and Paulo Canessa. “Interactions between Core Elements of the Botrytis Cinerea Circadian Clock Are Modulated by Light and Different Protein Domains.” Journal of Fungi 8, no. 5 (2022). https://doi.org/10.3390/jof8050486.
         26. Saenz-Agudelo, Pablo, Lívia Peluso, Roberto Nespolo, Bernardo R Broitman, Pilar A Haye, and Marco A Lardies. “Population Genomic Analyses Reveal Hybridization and Marked Differences in Genetic Structure of Scurria Limpet Sister Species with Parapatric Distributions across the South Eastern Pacific.” Ecology and Evolution 12, no. 5 (2022): e8888–e8888. https://doi.org/10.1002/ece3.8888.
         27. Silva-Sanzana, Christian, Maria Victoria Gangas, Diego Zavala, and Francisca Blanco-Herrera. “A Recipe for Success: Three Key Strategies Used by Aphids and Pseudomonas Syringae to Colonize the Phyllosphere.” Microbial Ecology, 2022. https://doi.org/10.1007/s00248-022-01965-2.
         28. Sonnendecker, Christian, Juliane Oeser, P Konstantin Richter, Patrick Hille, Ziyue Zhao, Cornelius Fischer, Holger Lippold, et al. “Low Carbon Footprint Recycling of Post-Consumer PET Plastic with a Metagenomic Polyester Hydrolase.” ChemSusChem 15, no. 9 (2022): e202101062–e202101062. https://doi.org/10.1002/cssc.202101062.
         29. Uribe, Felipe, Carlos Henríquez-Valencia, Anita Arenas-M, Joaquín Medina, Elena A Vidal, and Javier Canales. “Evolutionary and Gene Expression Analyses Reveal New Insights into the Role of LSU Gene-Family in Plant Responses to Sulfate-Deficiency.” Plants 11, no. 12 (2022). https://doi.org/10.3390/plants11121526.
         30. Vaishnav, Eeshit Dhaval, Carl G de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis, Dawn A Thompson, Joshua Z Levin, Francisco A Cubillos, and Aviv Regev. “The Evolution, Evolvability and Engineering of Gene Regulatory DNA.” Nature 603, no. 7901 (2022): 455–63. https://doi.org/10.1038/s41586-022-04506-6.
         31. Villarreal, Pablo, Pablo A Quintrel, Sebastián Olivares-Muñoz, José J Ruiz, Roberto F Nespolo, and Francisco A Cubillos. “Identification of New Ethanol-Tolerant Yeast Strains with Fermentation Potential from Central Patagonia.” Yeast 39, no. 1–2 (2022): 128–40. https://doi.org/10.1002/yea.3662.
         32. Villarroel, Carlos A, Angélica González-González, Jeniffer K Alvarez-Baca, Pablo Villarreal, Gabriel I Ballesteros, Christian C Figueroa, Francisco A Cubillos, and Claudio C Ramírez. “Genome Sequencing of a Predominant Clonal Lineage of the Grain Aphid Sitobion Avenae.” Insect Biochemistry and Molecular Biology 143 (2022): 103742–103742. https://doi.org/10.1016/j.ibmb.2022.103742.
         33. Zavala, Diego, Isabel Fuenzalida, María Victoria Gangas, Micaela Peppino Margutti, Claudia Bartoli, Fabrice Roux, Claudio Meneses, Ariel Herrera-Vásquez, and Francisca Blanco-Herrera. “Molecular and Genomic Characterization of the Pseudomonas Syringae Phylogroup 4: An Emerging Pathogen of Arabidopsis Thaliana and Nicotiana Benthamiana.” Microorganisms 10, no. 4 (2022). https://doi.org/10.3390/microorganisms10040707.

 

2021

1. 1. 1. 1. Ötvös K, Marconi M, Vega A, O’Brien J, Johnson A, Abualia R, Antonielli L, Montesinos JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A, Friml J, Gutiérrez RA, Wabnik K, Benková E. Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport [Article]
         2. Vega A, Fredes I, O’Brien J, Shen Z, Ötvös K, Abualia R, Benkova E, Briggs SP, Gutiérrez RA. Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture [Article]
         3. Zárate, R. V, Arancibia, D., Fernández, A., Signorelli, J. R., Larrondo, L. F., Andrés, M. E., and Zamorano, P. Optimization of the Light-On system in a lentiviral platform to a light-controlled expression of genes in neurons. [Article]
         4. Eshel G, Araus V, Undurraga S, Soto DC, Moraga C, Montecinos A, Moyano T, Maldonado J, Díaz FP, Varala K, Nelson CW, Contreras-López O, Pal-Gabor H, Kraiser T, Carrasco-Puga G, Nilo-Poyanco R, Zegar CM, Orellana A, Montecino M, Maass A, Allende ML, DeSalle R, Stevenson DW, González M, Latorre C, Coruzzi GM, Gutiérrez RA. Plant ecological genomics at the limits of life in the Atacama Desert. [Article]
         5. González-Martín A, Moyano T, Gutiérrez DA, Carvajal FJ, Cerpa W, Hanley JG, Gutiérrez RA, Álvarez AR. c-Abl regulates a synaptic plasticity-related transcriptional program involved in memory and learning. [Article]
         6. Peña-Oyarzun D, Rodriguez-Peña M, Burgos-Bravo F, Vergara A, Kretschmar C, Sotomayor-Flores C, Ramirez-Sarmiento CA, De Smedt H, Reyes M, Perez W, Torres VA, Morselli E, Altamirano F, Wilson CAM, Hill JA, Lavandero S, Criollo A. PKD2/polycystin-2 induces autophagy by forming a complex with BECN1. [Article]
         7. Moyano TC, Gutiérrez RA, Alvarez JM. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks. [Article]
         8. Villalobos P, Ramírez-Sarmiento CA, Babul J, Medina E. Human FoxP Transcription Factors as Tractable Models of the Evolution and Functional Outcomes of Three-Dimensional Domain Swapping. [Article]
         9. Galaz-Davison P, Román EA, Ramírez-Sarmiento CA. The N-terminal domain of RfaH plays an active role in protein fold-switching. [Article]
         10. Sonnendecker C, Oeser J, Richter PK, Hille P, Zhao Z, Fischer C, Lippold H, Blázquez-Sánchez P, Engelberger F, Ramírez-Sarmiento CA, Oeser T, Lihanova Y, Frank R, Jahnke HG, Billig S, Abel B, Sträter N, Matysik J, Zimmermann W. [Article]
         11. Engelberger, F., Galaz-Davison, P., Bravo, G., Rivera, M., and Ramírez-Sarmiento, C. A. Developing and Implementing Cloud-Based Tutorials That Combine Bioinformatics Software, Interactive Coding, and isualization Exercises for Distance Learning on Structural Bioinformatics. [Article]
         12. Figueroa D, Rojas V, Romero A, Larrondo LF, Salinas F. [Article]
         13. Romero, A., Rojas, V., Delgado, V., Salinas, F., and Larrondo, L. F. Modular and Molecular Optimization of a LOV (Light–Oxygen Voltage)-Based Optogenetic Switch in Yeast. [Article]
         14. Ruffel, S., Chaput, V., Przybyla-Toscano, J., Fayos, I., Ibarra, C., Moyano, T., Fizames, C., Tillard, P., O’Brien, J. A., Gutiérrez, R. A., Gojon, A., and Lejay, L. 2021. Genome-wide analysis in response to nitrogen and carbon identifies regulators for  root AtNRT2 transporters. Plant Physiol.  [Article]
         15. Dussarrat T, Decros G, Díaz FP, Gibon Y, Latorre C, Rolin D, Gutiérrez RA, Pétriacq P. Another Tale from the Harsh World: How Plants Adapt to Extreme Environments. [Article]
         16. Guajardo L, Aguilar R, Bustos FJ, Nardocci G, Gutiérrez RA, van Zundert B, Montecino M. Downregulation of the Polycomb-Associated Methyltransferase Ezh2 during Maturation of Hippocampal Neurons Is Mediated by MicroRNAs Let-7 and miR-124. [Article]
         17. Blázquez-Sánchez P, Engelberger F, Cifuentes-Anticevic J, Sonnendecker C, Griñén A, Reyes J, Díez B, Guixé V, Richter PK, Zimmermann W, Ramírez- Sarmiento CA. Antarctic polyester hydrolases degrade aliphatic and aromatic polyesters at moderate temperatures. [Article]
         18. Giroud, S., Habold, C., Nespolo, R. F., Mejías, C., Terrien, J., Logan, S. M., Henning, R. H., and Storey, K. B. 2020. The Torpid State: Recent Advances in Metabolic Adaptations and Protective  Mechanisms(†). Physiol. 11:623665 [Article]
         19. Villarreal P, Quintrel PA, Olivares-Muñoz S, Ruiz JJ, Nespolo RF, Cubillos FA. Identification of new ethanol-tolerant yeast strains with fermentation potential from central Patagonia. [Article]
         20. Quintero-Galvis JF, Saenz-Agudelo P, Celis-Diez JL, Amico GC, Vazquez S. The biogeography of Dromiciops in southern South America: Middle Miocene transgressions, speciation and associations with Nothofagus. [Article]
         21. Nespolo RF, Mejías C, Espinoza A, Quintero-Galvis J, Rezende EL, Fontúrbel FE, Bozinovic F. Heterothermy as the Norm, Homeothermy as the Exception: Variable Torpor Patterns in the South American Marsupial Monito del Monte (Dromiciops gliroides). [Article]
         22. Mardones, W., Villarroel, C. A., Abarca, V., Urbina, K., Peña, T. A., Molinet, J., Nespolo, R. F., and Cubillos, F. A. 2021. Rapid selection response to ethanol in Saccharomyces eubayanus emulates the  domestication process under brewing conditions. Microb. Biotechnol.  [Article]
         23. Mej??as, C., C. A. Castro-Pastene, H. Carrasco, J. F. Quintero-Galvis, M. Soto-Gamboa, F. Bozinovic, and R. F.Nespolo. Natural history of the relict marsupial Monito del Monte at the most extreme altitudinal and latitudinal location [Article]
         24. Olivares-Yañez C, Sánchez E, Pérez-Lara G, Seguel A, Camejo PY, Larrondo LF, Vidal EA, Canessa P. A comprehensive transcription factor and DNA-binding motif resource for the construction of gene regulatory networks in Botrytis cinerea and Trichoderma atroviride. [Article]
         25. Sabat P, Newsome SD, Pinochet S, Nespolo R, Sanchez-Hernandez JC, Maldonado K, Gerson AR, Sharp ZD, Whiteman JP. Triple Oxygen Isotope Measurements (?’17O) of Body WaterReflect Water Intake, Metabolism, and ?18O of Ingested Water in Passerines. [Article]
         26. Bekta?, A., Covington, M. F., Aidelberg, G., Arce, A., Matute, T., Núñez, I., Walsh, J., Boutboul, D., Delaugerre, C., Lindner, A. B., Federici, F., and Jayaprakash, A. D. 2021. Accessible LAMP-Enabled Rapid Test (ALERT) for Detecting SARS-CoV-2. Viruses. 13 [Article]
         27. Pacheco, J. M., Mansilla, N., Moison, M., Lucero, L., Gabarain, V. B., Ariel, F., and Estevez, J. M. 2021. The lncRNA APOLO and the transcription factor WRKY42 target common cell wall  EXTENSIN encoding genes to trigger root hair cell elongation. Plant Signal. Behav. :1920191 [Article]
         28. Pacheco JM, Canal MV, Pereyra CM, Welchen E, Martínez-Noël GMA, Estevez JM. The tip of the iceberg: emerging roles of TORC1, and its regulatory functions in plant cells. [Article]
         29. Eljebbawi A, Guerrero YDCR, Dunand C, Estevez JM. Highlighting reactive oxygen species as multitaskers in root development. [Article]
         30. Yáñez Feliú, G., Earle Gómez, B., Codoceo Berrocal, V., Muñoz Silva, M., Nuñez, I. N., Matute, T. F., Arce Medina, A., Vidal, G., Vidal Céspedes, C., Dahlin, J., Federici, F., and Rudge, T. J. 2021. Flapjack: Data Management and Analysis for Genetic Circuit Characterization. ACS Synth. Biol. 10:183–191  [Article]
         31. Arce A, Guzman Chavez F, Gandini C, Puig J, Matute T, Haseloff J, Dalchau N, Molloy J, Pardee K, Federici F. Decentralizing Cell-Free RNA Sensing With the Use of Low-Cost Cell Extracts. [Article]
         32. Moison, M., Pacheco, J. M., Lucero, L., Fonouni-Farde, C., Rodríguez-Melo, J., Mansilla, N., Christ, A., Bazin, J., Benhamed, M., Ibañez, F., Crespi, M., Estevez, J. M., and Ariel, F. 2021. The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair  cell expansion in response to cold. Mol. Plant. [Article]
         33. Casal JJ, Estevez JM. Auxin-Environment Integration in Growth Responses to Forage for Resources. [Article]
         34. Strasser, R., Seifert, G., Doblin, M. S., Johnson, K. L., Ruprecht, C., Pfrengle, F., Bacic, A., and Estevez, J. M. 2021. Cracking the “Sugar Code”: A Snapshot of N- and O-Glycosylation Pathways and  Functions in Plants Cells. Front. Plant Sci. 12:640919 [Article]
         35. Vago ME, Jaurena G, Estevez JM, Castro MA, Zavala JA, Ciancia M. Salt stress on Lotus tenuis triggers cell wall polysaccharide changes affecting their digestibility by ruminants. [Article]
         36. Pérez-Giménez, J., Iturralde, E. T., Torres Tejerizo, G., Quelas, J. I., Krol, E., Borassi, C., Becker, A., Estevez, J. M., and Lodeiro, A. R. 2021. A Stringent-Response-Defective Bradyrhizobium diazoefficiens Strain Does Not  Activate the Type 3 Secretion System, Elicits an Early Plant Defense Response, and Circumvents NH(4)NO(3)-Induced Inhibition of Nodulation. Appl. Environ. Microbiol. 87 [Article]
         37. Borassi C, Sede AR, Mecchia MA, Mangano S, Marzol E, Denita-Juarez SP, algado Salter JD, Velasquez SM, Muschietti JP, Estevez JM. Proline-rich extensin-like receptor kinases PERK5 and PERK12 are involved in pollen tube growth. [Article]
         38. Villarroel CA, Bastías M, Canessa P, Cubillos FA. Uncovering Divergence in Gene Expression Regulation in the Adaptation of Yeast to Nitrogen Scarcity. [Article]
         39. Del Campo A, Salamanca C, Fajardo A, Díaz-Castro F, Bustos C, Calfío C,
         40. Troncoso R, Pastene-Navarrete ER, Acuna-Castillo C, Milla LA, Villarroel CA, Cubillos FA, Aranda M, Rojo LE. Anthocyanins from Aristotelia chilensis Prevent Olanzapine-Induced Hepatic-Lipid Accumulation but Not Insulin Resistance in Skeletal Muscle Cells. [Article]
         41. Alvarez JM, Brooks MD, Swift J, Coruzzi GM. Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks. [Article]
         42. Canales J, Verdejo J, Carrasco-Puga G, Castillo FM, Arenas-M A, Calderini DF. Transcriptome Analysis of Seed Weight Plasticity in Brassica Napus. [Article]
         43. Solís, J. L., Muth, J., Canales, J., Lizana, C., Pruefer, D., Riegel, R., and Behn, A. Allelic diversity of three anthocyanin synthesis genes inaccessions of native Solanum tuberosum L. ssp. tuberosum at the Potato Genebank of the Universidad Austral de Chile. [Article]
         44. Renau-Morata B, Molina R-V, Minguet EG, Cebolla-Cornejo J, Carrillo L, Martí R, García-Carpintero V, Jiménez-Benavente E, Yang L, Cañizares J, Canales J, Medina J, Nebauer SG. Integrative Transcriptomic and Metabolomic Analysis at Organ Scale Reveals Gene Modules Involved in the Responses to Suboptimal Nitrogen Supply in Tomato. [Article]
         45. Núñez-Lillo G, Ulloa-Zepeda L, Pavez C, Riveros A, Blanco-Herrera F, Campos-Vargas R, Pedreschi R, Meneses C. Unravelling the Molecular Regulation Mechanisms of Slow Ripening Trait in Prunus pérsica. [Article]
         46. Muñoz-Guzmán, F., Caballero, V., and Larrondo, L. F. 2021. A Global Search for novel Transcription Factors impacting the Neurospora crassa  Circadian Clock. G3 (Bethesda). [Article]
         47. Montecchiarini, M. L., Silva-Sanzana, C., Valderramo, L., Alemano, S., Gollán, A., Rivadeneira, M. F., Bello, F., Vázquez, D., Blanco-Herrera, F., Podestá, F. E., and Tripodi, K. E. J. Biochemical differences in the skin of two blueberries (Vaccinium corymbosum) varieties with contrasting firmness: Implication of ions, metabolites and cell wall related proteins in two developmental stages. [Article]
         48. Matute T., Nunez I., Rivera M., Reyes J., Blazquez-Sanchez P., Arce A., Brown AJ., Gandini Ch., Molloy J., Ramirez-Sarmiento CA*., and Fernán F*. Homebrew reagents for low cost RT-LAMP. [Article]
         49.  Di Genova A, Nardocci G, Maldonado-Agurto R, Hodar C, Valdivieso C, Morales P, Gajardo F, Marina R, Gutiérrez RA, Orellana A, Cambiazo V, Gonzalez M, Glavic A, Mendez MA, Maass A, Allende ML, Montecino MA. Genome sequencing and transcriptomic analysis of the Andean killifish Orestias ascotanensis reveals adaptation to high-altitude aquatic life. [Article]

2020

 

1. 1. 1. hu, S., Martínez Pacheco, J., Estevez, J. M., and Yu, F. 2020. Autocrine regulation of root hair size by the RALF-FERONIA-RSL4 signaling pathway. New Phytol. 227:45–49 [Article]
      2. Swift, J., Alvarez, J. M., Araus, V., Gutiérrez, R. A., and Coruzzi, G. M. 2020. Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics  underlie plant growth rates. Proc. Natl. Acad. Sci. U. S. A. 117:12531–12540 [Article]
      3. Villalobos-Cid, M., Salinas, F., Kessi-Pérez, E. I., De Chiara, M., Liti, G., Inostroza-Ponta, M., and Martínez, C. 2020. Comparison of phylogenetic tree topologies for nitrogen associated genes partially reconstruct the evolutionary history of saccharomyces cerevisiae. Microorganisms. [Article]
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2019

 

1. 1. 1. Naulin, P. A., Armijo, G. I., Vega, A. S., Tamayo, K. P., Gras, D. E., de la Cruz, J., and Gutiérrez, R. A. 2020. Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis  thaliana. Plant Cell Physiol. 61:342–352 [Article]
      2. Fernandez-Gomez, B., Maldonado, J., Mandakovic, D., Gaete, A., Gutierrez, R. A., Maass, A., Cambiazo, V., and Gonzalez, M. 2019. Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils. Sci. Rep. 9:1042 [Article]
      3. Kessi-Perez, E. I., Salinas, F., Molinet, J., Gonzalez, A., Muniz, S., Guillamon, J. M., Hall, M. N., Larrondo, L. F., and Martinez, C. 2019. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. 36:65–74 [Article]
      4. Oporto, C. I., Villarroel, C. A., Tapia, S. M., Garcia, V., and Cubillos, F. A. 2019. Distinct Transcriptional Changes in Response to Patulin Underlie Toxin Biosorption Differences in Saccharomyces Cerevisiae. Toxins (Basel). 11 [Article]
      5. Cruz, N., Méndez, T., Ramos, P., Urbina, D., Vega, A., Gutiérrez, R. A., Moya-León, M. A., and Herrera, R. 2019. Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy. Sci. Rep. 9:18981 [Article]
      6. Vega, A., O’Brien, J. A., and Gutiérrez, R. A. 2019. Nitrate and hormonal signaling crosstalk for plant growth and development. Curr. Opin. Plant Biol. 52:155–163 [Article]
      7. Horta, M. A. C., Thieme, N., Gao, Y., Burnum-Johnson, K. E., Nicora, C. D., Gritsenko, M. A., Lipton, M. S., Mohanraj, K., de Assis, L. J., Lin, L., Tian, C., Braus, G. H., Borkovich, K. A., Schmoll, M., Larrondo, L. F., Samal, A., Goldman, G. H., and Benz, J. P. 2019. Broad Substrate-Specific Phosphorylation Events Are Associated With the Initial  Stage of Plant Cell Wall Recognition in Neurospora crassa. Front. Microbiol. 10:2317 [Article]
      8. Wood, J. R., Díaz, F. P., Latorre, C., Wilmshurst, J. M., Burge, O. R., González, F., and Gutiérrez, R. A. 2019. Ancient parasite DNA from late Quaternary Atacama Desert rodent middens. Quat. Sci. Rev. 226:106031 [Article]
      9. Villalobos-Cid, M., Salinas, F., Kessi-Pérez, E. I., De Chiara, M., Liti, G., Inostroza-Ponta, M., and Martínez, C. 2019. Comparison of Phylogenetic Tree Topologies for Nitrogen Associated Genes Partially  Reconstruct the Evolutionary History of Saccharomyces cerevisiae. Microorganisms. 8 [Article]
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      14. Pollak, B., Cerda, A., Delmans, M., Alamos, S., Moyano, T., West, A., Gutierrez, R. A., Patron, N. J., Federici, F., and Haseloff, J. 2019. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytol. 222:628–640 [Article]
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      25. Diaz, F. P., Latorre, C., Carrasco-Puga, G., Wood, J. R., Wilmshurst, J. M., Soto, D. C., Cole, T. L., and Gutierrez, R. A. 2019. Multiscale climate change impacts on plant diversity in the Atacama Desert. Glob. Chang. Biol. 25:1733–1745 [Article]
      26. Salazar, M. P., Valenzuela, D., Tironi, M., and Gutiérrez, R. A. 2019. The ambivalent regulator: the construction of a regulatory style for genetically modified crops in Chile. Tapuya Lat. Am. Sci. Technol. Soc. 0:1–21 [Article]
      27. Cubillos, F. A., Gibson, B., Grijalva-Vallejos, N., Krogerus, K., and Nikulin, J. 2019. Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers. Yeast. [Article]
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      33. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2018. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8 [Article]
      34. Rojas-Aedo, J. F., Gil-Durán, C., Goity, A., Vaca, I., Levicán, G., Larrondo, L. F., and Chávez, R. 2018. The developmental regulator Pcz1 affects the production of secondary metabolites in the filamentous fungus Penicillium roqueforti. Microbiol. Res. 212–213:67–74 [Article]
      35. Larrondo, L., and Canessa, P. 2018. The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis Luis. in: Current Topics in Microbiology and Immunology, Khan, A., Montenegro-Montero, A., and Mathelier, A. 2018. Put science first and formatting later. EMBO Rep. 19 [Article]
      36. Kan, A., Del Valle, I., Rudge, T., Federici, F., and Haseloff, J. 2018. Intercellular adhesion promotes clonal mixing in growing bacterial populations. J. R. Soc. Interface. 15:20180406 [Article]
      37. Arraño-Salinas, P., Domínguez-Figueroa, J., Herrera-Vásquez, A., Zavala, D., Medina, J., Vicente-Carbajosa, J., Meneses, C., Canessa, P., Moreno, A. A., and Blanco-Herrera, F. 2018. WRKY7, -11 and -17 transcription factors are modulators of the bZIP28 branch of the unfolded protein response during PAMP-triggered immunity in Arabidopsis thaliana. Plant Sci. :0–1 [Article]
      38. Contreras-López, O., Moyano, T. C., Soto, D. C., and Gutiérrez, R. A. 2018. Step-by-step construction of gene co-expression networks from high-throughput Arabidopsis RNA sequencing data. Methods Mol. Biol. 1761:275–301 [Article]
      39. Henríquez-Valencia, C., Arenas-M, A., Medina, J., and Canales, J. 2018. Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana. Front. Plant Sci. 9:1–20[Article]
      40. Salinas-Grenet, H., Herrera-Vásquez, A., Parra, S., Cortez, A., Gutiérrez, L., Pollmann, S., León, G., and Blanco-Herrera, F. 2018. Modulation of auxin levels in pollen grains affects stamen development and anther dehiscence in Arabidopsis. Int. J. Mol. Sci. 19:1–13 [Article]
      41. Quintero-Galvis, J. F., Paleo-López, R., Solano-Iguaran, J. J., Poupin, M. J., Ledger, T., Gaitan-Espitia, J. D., Anto?, A., Travisano, M., and Nespolo, R. F. 2018. Exploring the evolution of multicellularity in Saccharomyces cerevisiae under bacteria environment: An experimental phylogenetics approach. Ecol. Evol. 8:4619–4630 [Article]
      42. Brice, C., Cubillos, F. A., Dequin, S., Camarasa, C., and Martinez, C. 2018. Adaptability of the Saccharomyces cerevisiae yeasts to wine fermentation conditions relies on their strong ability to consume nitrogen. PLoS One. 13:e0192383 [Article]
      43. Zúñiga, A., Fuente, F. D. La, Federici, F., Lionne, C., Bônnet, J., De Lorenzo, V., and González, B. 2018. An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 to Stimulate Plant Growth. ACS Synth. Biol. 7:1519–1527 [Article]
      44. Kessi-Pérez, E. I., Salinas, F., Molinet, J., González, A., Muñiz, S., Guillamón, J. M., Hall, M. N., Larrondo, L. F., and Martínez, C. 2018. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. [Article]
      45. Nespolo, R. F., Gaitan-Espitia, J. D., Quintero-Galvis, J. F., Fernandez, F. V, Silva, A. X., Molina, C., Storey, K. B., and Bozinovic, F. 2018. A functional transcriptomic analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of protective functions during hibernation. Mol. Ecol. 27:4489–4500 [Article]
      46. Boni, A. C., Ambrósio, D. L., Cupertino, F. B., Montenegro-Montero, A., Virgilio, S., Freitas, F. Z., Corrocher, F. A., Gonçalves, R. D., Yang, A., Weirauch, M. T., Hughes, T. R., Larrondo, L. F., and Bertolini, M. C. 2018. Neurospora crassa developmental control mediated by the FLB-3 transcription factor. Fungal Biol. 122:570–582 [Article]
      47. Salinas, F., Rojas, V., Delgado, V., López, J., Agosin, E., and Larrondo, L. F. 2018. Fungal Light-Oxygen-Voltage Domains for Optogenetic Control of Gene Expression and Flocculation in Yeast. MBio. 9:e00626-18 [Article]
      48. Muñoz-Llanos, M., García-Pérez, M. A., Xu, X., Tejos-Bravo, M., Vidal, E. A., Moyano, T. C., Gutiérrez, R. A., Aguayo, F. I., Pacheco, A., García-Rojo, G., Aliaga, E., Rojas, P. S., Cidlowski, J. A., and Fiedler, J. L. 2018.  MicroRNA Profiling and Bioinformatics Target Analysis in Dorsal Hippocampus of Chronically Stressed Rats: Relevance to Depression Pathophysiology. Front. Mol. Neurosci. 11:1–18 [Article]
      49. Cifuentes-Esquivel, N., Celiz-Balboa, J., Henriquez-Valencia, C., Mitina, I., Arraño-Salinas, P., Moreno, A. A., Meneses, C., Blanco-Herrera, F., and Orellana, A. 2018. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem. 119:6857–6868 [Article]
      50. Tapia, S. M., Cuevas, M., Abarca, V., Delgado, V., Rojas, V., García, V., Brice, C., Martínez, C., Salinas, F., Larrondo, L. F., and Cubillos, F. A. 2018. GPD1 and ADH3 natural variants underlie glycerol yield differences in wine fermentation. Front. Microbiol. 9:1–13 [Article]
      51. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2017. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8:2173 [Article]

2018

1. 1. 1. Mandakovic, D., Rojas, C., Maldonado, J., Latorre, M., Travisany, D., Delage, E., and … 2018. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci. Rep. 8:5875 [Article]
      2. Castillo, F. M., Canales, J., Claude, A., and Calderini, D. F. 2018. Expansin genes expression in growing ovaries and grains of sunflower are tissue-specific and associate with final grain weight. BMC Plant Biol. 18:327 [Article]
      3. Pollak, B., Cerda, A., Delmans, M., Álamos, S., Moyano, T., West, A., Gutiérrez, R. A., Patron, N., Federici, F., and Haseloff, J. 2018. Loop Assembly: a simple and open system for recursive fabrication of DNA circuits. bioRxiv. :247593 [Article]
      4. Wood, J. R., Diaz, F. P., Latorre, C., Wilmshurst, J. M., Burge, O. R., and Gutierrez, R. A. 2018. Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile. Sci. Rep. 8:17208 [Article]
      5. Nespolo, R., Gaitán-Espitia, J., Quintero-Galvis, J., Fernandez, F., Silva, A., Molina, C., Storey, K., and ozinovic, F. 2018. A functional transcriptomics analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of hibernation. Mol. Ecol. 10:1–3 [Article]
      6. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2018. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8 [Article]
      7. Rojas-Aedo, J. F., Gil-Durán, C., Goity, A., Vaca, I., Levicán, G., Larrondo, L. F., and Chávez, R. 2018. The developmental regulator Pcz1 affects the production of secondary metabolites in the filamentous fungus Penicillium roqueforti. Microbiol. Res. 212–213:67–74 [Article]
      8. Larrondo, L., and Canessa, P. 2018. The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis Luis. in: Current Topics in Microbiology and Immunology [Article]
      9.  Khan, A., Montenegro-Montero, A., and Mathelier, A. 2018. Put science first and formatting later. EMBO Rep. 19 [Article]
      10. Kan, A., Del Valle, I., Rudge, T., Federici, F., and Haseloff, J. 2018. Intercellular adhesion promotes clonal mixing in growing bacterial populations. J. R. Soc. Interface. 15:20180406 [Article]
      11. Arraño-Salinas, P., Domínguez-Figueroa, J., Herrera-Vásquez, A., Zavala, D., Medina, J., Vicente-Carbajosa, J., Meneses, C., Canessa, P., Moreno, A. A., and Blanco-Herrera, F. 2018. WRKY7, -11 and -17 transcription factors are modulators of the bZIP28 branch of the unfolded protein response during PAMP-triggered immunity in Arabidopsis thaliana. Plant Sci. :0–1 [Article]
      12. Contreras-López, O., Moyano, T. C., Soto, D. C., and Gutiérrez, R. A. 2018. Step-by-step construction of gene co-expression networks from high-throughput Arabidopsis RNA sequencing data. Methods Mol. Biol. 1761:275–301 [Article]
      13. Henríquez-Valencia, C., Arenas-M, A., Medina, J., and Canales, J. 2018. Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana. Front. Plant Sci. 9:1–20 [Article]
      14. Salinas-Grenet, H., Herrera-Vásquez, A., Parra, S., Cortez, A., Gutiérrez, L., Pollmann, S., León, G., and Blanco-Herrera, F. 2018. Modulation of auxin levels in pollen grains affects stamen development and anther dehiscence in Arabidopsis. Int. J. Mol. Sci. 19:1–13 [Article]
      15. Quintero-Galvis, J. F., Paleo-López, R., Solano-Iguaran, J. J., Poupin, M. J., Ledger, T., Gaitan-Espitia, J. D., Anto?, A., Travisano, M., and Nespolo, R. F. 2018. Exploring the evolution of multicellularity in Saccharomyces cerevisiae under bacteria environment: An experimental phylogenetics approach. Ecol. Evol. 8:4619–4630 [Article]
      16. Brice, C., Cubillos, F. A., Dequin, S., Camarasa, C., and Martinez, C. 2018. Adaptability of the Saccharomyces cerevisiae yeasts to wine fermentation conditions relies on their strong ability to consume nitrogen. PLoS One. 13:e0192383[Article]
      17. Zúñiga, A., Fuente, F. D. La, Federici, F., Lionne, C., Bônnet, J., De Lorenzo, V., and González, B. 2018. An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 to Stimulate Plant Growth. ACS Synth. Biol. 7:1519–1527 [Article]
      18. Kessi-Pérez, E. I., Salinas, F., Molinet, J., González, A., Muñiz, S., Guillamón, J. M., Hall, M. N., Larrondo, L. F., and Martínez, C. 2018. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. [Article]
      19. Nespolo, R. F., Gaitan-Espitia, J. D., Quintero-Galvis, J. F., Fernandez, F. V, Silva, A. X., Molina, C., Storey, K. B., and Bozinovic, F. 2018. A functional transcriptomic analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of protective functions during hibernation. Mol. Ecol. 27:4489–4500 [Article]
      20. Boni, A. C., Ambrósio, D. L., Cupertino, F. B., Montenegro-Montero, A., Virgilio, S., Freitas, F. Z., Corrocher, F. A., Gonçalves, R. D., Yang, A., Weirauch, M. T., Hughes, T. R., Larrondo, L. F., and Bertolini, M. C. 2018. Neurospora crassa developmental control mediated by the FLB-3 transcription factor. Fungal Biol. 122:570–582 [Article]
      21. Salinas, F., Rojas, V., Delgado, V., López, J., Agosin, E., and Larrondo, L. F. 2018. Fungal Light-Oxygen-Voltage Domains for Optogenetic Control of Gene Expression and Flocculation in Yeast. MBio. 9:e00626-18 [Article]
      22. Muñoz-Llanos, M., García-Pérez, M. A., Xu, X., Tejos-Bravo, M., Vidal, E. A., Moyano, T. C., Gutiérrez, R. A., Aguayo, F. I., Pacheco, A., García-Rojo, G., Aliaga, E., Rojas, P. S., Cidlowski, J. A., and Fiedler, J. L. 2018. MicroRNA Profiling and Bioinformatics Target Analysis in Dorsal Hippocampus of Chronically Stressed Rats: Relevance to Depression Pathophysiology. Front. Mol. Neurosci. 11:1–18 [Article]
      23. Cifuentes-Esquivel, N., Celiz-Balboa, J., Henriquez-Valencia, C., Mitina, I., Arraño-Salinas, P., Moreno, A. A., Meneses, C., Blanco-Herrera, F., and Orellana, A. 2018. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem. 119:6857–6868 [Article]
      24. Tapia, S. M., Cuevas, M., Abarca, V., Delgado, V., Rojas, V., García, V., Brice, C., Martínez, C., Salinas, F., Larrondo, L. F., and Cubillos, F. A. 2018. GPD1 and ADH3 natural variants underlie glycerol yield differences in wine fermentation. Front. Microbiol. 9:1–13 [Article]
      25. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2017. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8:2173  [Article]