Publicaciones del Centro

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Publicaciones del Centro

2023

  1. Abarzúa, T., Camus, I., Ortiz, F., Ñunque, A., Cubillos, F. A., Sabat, P., and Nespolo, R. F. 2023. Modeling heterothermic fitness landscapes in a marsupial hibernator using changes  in body composition. Oecologia.
  2. Alvarez, J. M., Hinckley, W. E., Leonelli, L., Brooks, M. D., and Coruzzi, G. M. 2023. DamID-seq: A Genome-Wide DNA Methylation Method that Captures Both Transient and  Stable TF-DNA Interactions in Plant Cells. Methods Mol. Biol. 2698:87–107
  3. Blázquez-Sánchez, P., Vargas, J. A., Furtado, A. A., Griñen, A., Leonardo, D. A., Sculaccio, S. A., Pereira, H. D., Sonnendecker, C., Zimmermann, W., Díez, B., Garratt, R. C., and Ramírez-Sarmiento, C. A. 2023. Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop  exchange. Protein Sci. 32:e4757
  4. Breedon, S. A., Varma, A., Quintero-Galvis, J. F., Gaitán-Espitia, J. D., Mejías, C., Nespolo, R. F., and Storey, K. B. 2023. Torpor-responsive microRNAs in the heart of the Monito del monte, Dromiciops  gliroides. Biofactors. 49:1061–1073
  5. Canales, J., Arenas-M, A., Medina, J., and Vidal, E. A. 2023. A Revised View of the LSU Gene Family: New Functions in Plant Stress Responses  and Phytohormone Signaling. Int. J. Mol. Sci. 24
  6. Carrillo, L., Baroja-Fernández, E., Renau-Morata, B., Muñoz, F. J., Canales, J., Ciordia, S., Yang, L., Sánchez-López, Á. M., Nebauer, S. G., Ceballos, M. G., Vicente-Carbajosa, J., Molina, R. V, Pozueta-Romero, J., and Medina, J. 2023. Ectopic expression of the AtCDF1 transcription factor in potato enhances tuber  starch and amino acid contents and yield under open field conditions. Front. Plant Sci. 14:1010669
  7. Chaput, V., Li, J., Séré, D., Tillard, P., Fizames, C., Moyano, T., Zuo, K., Martin, A., Gutiérrez, R. A., Gojon, A., and Lejay, L. 2023. Characterization of the signalling pathways involved in the repression of root  nitrate uptake by nitrate in Arabidopsis thaliana. J. Exp. Bot. 74:4244–4258
  8. Coñuecar, R., Asela, I., Rivera, M., Galaz-Davison, P., González-Higueras, J., Hamilton, G. L., Engelberger, F., Ramírez-Sarmiento, C. A., Babul, J., Sanabria, H., and Medina, E. 2023. DNA facilitates heterodimerization between human transcription factors FoxP1 and  FoxP2 by increasing their conformational flexibility. iScience. 26:107228
  9. Crnjar, A., Griñen, A., Kamerlin, S. C. L., and Ramírez-Sarmiento, C. A. 2023. Conformational Selection of a Tryptophan Side Chain Drives the Generalized  Increase in Activity of PET Hydrolases through a Ser/Ile Double Mutation. ACS Org. Inorg. Au. 3:109–119
  10. Cruz, P., Paredes, N., Asela, I., Kolimi, N., Molina, J. A., Ramírez-Sarmiento, C. A., Goutam, R., Huang, G., Medina, E., and Sanabria, H. 2023. Domain tethering impacts dimerization and DNA-mediated allostery in the human  transcription factor FoxP1. J. Chem. Phys. 158
  11. Frêne, C., Armesto, J. J., Nespolo, R. F., Gaxiola, A., Navarrete, S. A., Troncoso, A., Muñoz, A., and Corcuera, L. J. 2023. Chilean long-term Socio-Ecological Research Network: progresses and challenges towards improving stewardship of unique ecosystems. Rev. Chil. Hist. Nat. 96:1
  12. Guerrero, M., Ruiz, C., Romero, A., Robeson, L., Ruiz, D., and Salinas, F. 2023. The N-Terminal Region of the BcWCL1 Photoreceptor Is Necessary for  Self-Dimerization and Transcriptional Activation upon Light Stimulation in Yeast. Int. J. Mol. Sci. 24
  13. Jia, Z., Giehl, R. F. H., Hartmann, A., Estevez, J. M., Bennett, M. J., and von Wirén, N. 2023. A spatially concerted epidermal auxin signaling framework steers the root hair  foraging response under low nitrogen. Curr. Biol. 33:3926-3941.e5
  14. Kessi-Pérez, E. I., Acuña, E., Bastías, C., Fundora, L., Villalobos-Cid, M., Romero, A., Khaiwal, S., De Chiara, M., Liti, G., Salinas, F., and Martínez, C. 2023. Single nucleotide polymorphisms associated with wine fermentation and adaptation  to nitrogen limitation in wild and domesticated yeast strains. Biol. Res. 56:43
  15. Kobayashi, S., Maldonado, J. E., Gaete, A., Araya, I., Aguado-Norese, C., Cumplido, N., Díaz, S., Espinoza, A., Fernández, E., Gajardo, F., González-Ordenes, F., Hauyon, K., Maldonado, P., Maldonado, R., Pochet, I., Riveros, A., Sandoval, P., Sepúlveda-González, A., Stuardo, C., Tapia-Reyes, P., Thornton, C., Undurraga, S., Varas, M., Valdivieso, C., Gutiérrez, R. A., Orellana, A., Montecino, M., Maass, A., González, M., Allende, M. L., Hodar, C., and Irles, P. 2023. DNA sequencing in the classroom: complete genome sequence of two earwig  (Dermaptera; Insecta) species. Biol. Res. 56:6
  16. Larrondo, L. F. 2023. Circadian entrainment of in vitro reactions, in real time, and around the clock. Proc. Natl. Acad. Sci. U. S. A. 120:e2303566120
  17. Mandakovic, D., Aguado-Norese, C., García-Jiménez, B., Hodar, C., Maldonado, J. E., Gaete, A., Latorre, M., Wilkinson, M. D., Gutiérrez, R. A., Cavieres, L. A., Medina, J., Cambiazo, V., and Gonzalez, M. 2023. Testing the stress gradient hypothesis in soil bacterial communities associated  with vegetation belts in the Andean Atacama Desert. Environ. microbiome. 18:24
  18. Mira, J. P., Arenas-M, A., Calderini, D. F., and Canales, J. 2023. Integrated Transcriptome Analysis Identified Key Expansin Genes Associated with  Wheat Cell Wall, Grain Weight and Yield. Plants (Basel, Switzerland). 12
  19. Montenegro-Montero, A., Goity, A., Canessa, P. F., and Larrondo, L. F. 2023. Identification of a common secondary mutation in the Neurospora crassa knockout  collection conferring a cell fusion-defective phenotype. Microbiol. Spectr. :e0208723
  20. Mora, V., López, G., Molina, R., Coniglio, A., Nievas, S., De Diego, N., Zeljkovi?, S. ?., Sarmiento, S. S., Spíchal, L., Robertson, S., Wilkins, O., Elías, J., Pedraza, R., Estevez, J. M., Belmonte, M. F., and Cassán, F. 2023. Azospirillum argentinense Modifies Arabidopsis Root Architecture Through Auxin-dependent Pathway and Flagellin. J. Soil Sci. Plant Nutr. 23:4543–4557
  21. Olivares-Yañez, C., Alessandri, M. P., Salas, L., and Larrondo, L. F. 2023. Methylxanthines Modulate Circadian Period Length Independently of the Action of  Phosphodiesterase. Microbiol. Spectr. 11:e0372722
  22. Olmedo, P., Zepeda, B., Delgado-Rioseco, J., Leiva, C., Moreno, A. A., Sagredo, K., Blanco-Herrera, F., Pedreschi, R., Infante, R., Meneses, C., and Campos-Vargas, R. 2023. Metabolite Profiling Reveals the Effect of Cold Storage on Primary Metabolism in  Nectarine Varieties with Contrasting Mealiness. Plants (Basel, Switzerland). 12
  23. Orostica, B., Núñez, I., Matúte, T., Núñez, F., and Federici, F. 2023. Building an Open-Source DNA Assembler Device. IEEE Des. Test. 40:69–77
  24. Pacheco, J. M., Gabarain, V. B., Lopez, L. E., Lehuedé, T. U., Ocaranza, D., and Estevez, J. M. 2023. Understanding signaling pathways governing the polar development of root hairs in  low-temperature, nutrient-deficient environments. Curr. Opin. Plant Biol. 75:102386
  25. Pacheco, J. M., Song, L., Kub?nová, L., Ove?ka, M., Berdion Gabarain, V., Peralta, J. M., Lehuedé, T. U., Ibeas, M. A., Ricardi, M. M., Zhu, S., Shen, Y., Schepetilnikov, M., Ryabova, L. A., Alvarez, J. M., Gutierrez, R. A., Grossmann, G., Šamaj, J., Yu, F., and Estevez, J. M. 2023. Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling  controls root hair growth at low temperature linked to low nitrate in Arabidopsis thaliana. New Phytol. 238:169–185
  26. Peluso, L., Broitman, B. R., Lardies, M. A., Nespolo, R. F., and Saenz-Agudelo, P. 2023. Comparative population genetics of congeneric limpets across a biogeographic  transition zone reveals common patterns of genetic structure and demographic history. Mol. Ecol. 32:3812–3825
  27. Pereyra, M. E., Costigliolo Rojas, C., Jarrell, A. F., Hovland, A. S., Snipes, S. A., Nagpal, P., Alabadí, D., Blázquez, M. A., Gutiérrez, R. A., Reed, J. W., Gray, W. M., and Casal, J. J. 2023. PIF4 enhances the expression of SAUR genes to promote growth in response to  nitrate. Proc. Natl. Acad. Sci. U. S. A. 120:e2304513120
  28. Pérez-Lara, G., Moyano, T. C., Vega, A., Larrondo, L. F., Polanco, R., Álvarez, J. M., Aguayo, D., and Canessa, P. 2023. The Botrytis cinerea Gene Expression Browser. J. fungi (Basel, Switzerland). 9
  29. Pérez-Lara, G., Olivares-Yañez, C., van Bakel, H., Larrondo, L. F., and Canessa, P. 2023. Genome-Wide Characterization of Light-Regulated Gene Expression in Botrytis  cinerea Reveals Underlying Complex Photobiology. Int. J. Mol. Sci. 24
  30. Retamal-Farfán, I., González-Higueras, J., Galaz-Davison, P., Rivera, M., and Ramírez-Sarmiento, C. A. 2023. Exploring the structural acrobatics of fold-switching proteins using simplified  structure-based models. Biophys. Rev. 15:787–799
  31. Rivera, M., Burgos-Bravo, F., Engelberger, F., Asor, R., Lagos-Espinoza, M. I. A., Figueroa, M., Kukura, P., Ramírez-Sarmiento, C. A., Baez, M., Smith, S. B., and Wilson, C. A. M. 2023. Effect of temperature and nucleotide on the binding of BiP chaperone to a protein  substrate. Protein Sci. 32:e4706
  32. Rodríguez-García, D. R., Rondón Guerrero, Y. D. C., Ferrero, L., Rossi, A. H., Miglietta, E. A., Aptekmann, A. A., Marzol, E., Martínez Pacheco, J., Carignani, M., Berdion Gabarain, V., Lopez, L. E., Díaz Dominguez, G., Borassi, C., Sánchez-Serrano, J. J., Xu, L., Nadra, A. D., Rojo, E., Ariel, F., and Estevez, J. M. 2023. Transcription factor NAC1 activates expression of peptidase-encoding AtCEPs in  roots to limit root hair growth. Plant Physiol.
  33. Rojas, V., and Larrondo, L. F. 2023. Coupling Cell Communication and Optogenetics: Implementation of a Light-Inducible  Intercellular System in Yeast. ACS Synth. Biol. 12:71–82
  34. Silva-Sanzana, C., Gangas, M. V., Zavala, D., and Blanco-Herrera, F. 2023. A Recipe for Success: Three Key Strategies Used by Aphids and Pseudomonas  syringae to Colonize the Phyllosphere. Microb. Ecol. 85:1–8
  35. Simpson, K., L’Homme, A., Keymer, J., and Federici, F. 2023. Spatial biology of Ising-like synthetic genetic networks. BMC Biol. 21:185
  36. Tabilo-Agurto, C., Del Rio-Pinilla, V., Eltit-Villarroel, V., Goity, A., Muñoz-Guzmán, F., and Larrondo, L. F. 2023. Developing a Temperature-Inducible Transcriptional Rheostat in Neurospora crassa. MBio. 14:e0329122
  37. Urra, C., Sanhueza, D., Pavez, C., Tapia, P., Núñez-Lillo, G., Minio, A., Miossec, M., Blanco-Herrera, F., Gainza, F., Castro, A., Cantu, D., and Meneses, C. 2023. Identification of grapevine clones via high-throughput amplicon sequencing: a  proof-of-concept study. G3 (Bethesda). 13
  38. Vargas, J., Gómez, I., Vidal, E. A., Lee, C. P., Millar, A. H., Jordana, X., and Roschzttardtz, H. 2023. Growth Developmental Defects of Mitochondrial Iron Transporter 1 and 2 Mutants in  Arabidopsis in Iron Sufficient Conditions. Plants (Basel, Switzerland). 12
  39. Venegas, C. A., Saona, L. A., Urbina, K., Quintrel, P., Peña, T. A., Mardones, W., and Cubillos, F. A. 2023. Addition of Saccharomyces eubayanus to SCOBY fermentations modulates the chemical  and volatile compound profiles in kombucha. Food Microbiol. 116:104357
  40. Villalobos, P., Carvajal, A. I., Castro-Fernández, V., Babul, J., Ramírez-Sarmiento, C. A., and Medina, E. 2023. Unraveling the folding and dimerization properties of the human FoxP subfamily of  transcription factors. FEBS Lett. 597:1894–1905

 

PUBLICACIONES DEL CENTRO

2022

        1. Darriere, T, E Jobet, D Zavala, M L Escande, N Durut, A de Bures, F Blanco-Herrera, et al. “Upon Heat Stress Processing of Ribosomal RNA Precursors into Mature RRNAs Is Compromised after Cleavage at Primary P Site in Arabidopsis Thaliana.” RNA Biology 19, no. 1 (2022): 719–34. https://doi.org/10.1080/15476286.2022.2071517.
        2. Di Genova, Alex, Gino Nardocci, Rodrigo Maldonado-Agurto, Christian Hodar, Camilo Valdivieso, Pamela Morales, Felipe Gajardo, et al. “Genome Sequencing and Transcriptomic Analysis of the Andean Killifish Orestias Ascotanensis Reveals Adaptation to High-Altitude Aquatic Life.” Genomics 114, no. 1 (2022): 305–15. https://doi.org/10.1016/j.ygeno.2021.12.018.
        3. Dussarrat, Thomas, Sylvain Prigent, Claudio Latorre, Stéphane Bernillon, Amélie Flandin, Francisca P Díaz, Cédric Cassan, et al. “Predictive Metabolomics of Multiple Atacama Plant Species Unveils a Core Set of Generic Metabolites for Extreme Climate Resilience.” New Phytologist 234, no. 5 (June 2022): 1614–28. https://doi.org/10.1111/nph.18095.
        4. Espinosa, Rodrigo, Karla Gutiérrez, Javiera Rios, Fernando Ormeño, Liliana Yantén, Pablo Galaz-Davison, César A Ramírez-Sarmiento, et al. “Palmitic and Stearic Acids Inhibit Chaperone-Mediated Autophagy (CMA) in POMC-like Neurons In Vitro.” Cells 11, no. 6 (2022). https://doi.org/10.3390/cells11060920.
        5. Feng, Shaohong, Ming Bai, Iker Rivas-González, Cai Li, Shiping Liu, Yijie Tong, Haidong Yang, et al. “Incomplete Lineage Sorting and Phenotypic Evolution in Marsupials.” Cell 185, no. 10 (2022): 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034.
        6. Fontúrbel, Francisco E, Lida M Franco, Francisco Bozinovic, Julian F Quintero-Galvis, Carlos Mejías, Guillermo C Amico, M Soledad Vazquez, et al. “The Ecology and Evolution of the Monito Del Monte, a Relict Species from the Southern South America Temperate Forests.” Ecology and Evolution 12, no. 3 (2022): e8645–e8645. https://doi.org/10.1002/ece3.8645.
        7. Galaz-Davison, Pablo, Diego U Ferreiro, and César A Ramírez-Sarmiento. “Coevolution-Derived Native and Non-Native Contacts Determine the Emergence of a Novel Fold in a Universally Conserved Family of Transcription Factors.” Protein Science 31, no. 6 (2022): e4337–e4337. https://doi.org/10.1002/pro.4337.
        8. Guzman-Chavez, Fernando, Anibal Arce, Abhinav Adhikari, Sandra Vadhin, Jose Antonio Pedroza-Garcia, Chiara Gandini, Jim W Ajioka, et al. “Constructing Cell-Free Expression Systems for Low-Cost Access.” ACS Synthetic Biology 11, no. 3 (March 2022): 1114–28. https://doi.org/10.1021/acssynbio.1c00342.
        9. Isabel, Fuenzalida-Valdivia, Gangas Maria Victoria, Zavala Diego, Herrera-Vásquez Ariel, Roux Fabrice, Meneses Claudio, Blanco-Herrera Francisca, and Baltrus David A. “Draft Genome Sequence of Pseudomonas Syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis Thaliana Plants.” Microbiology Resource Announcements 11, no. 1 (June 2022): e01001-21. https://doi.org/10.1128/mra.01001-21.
        10. Lamig, Liliana, Sebastián Moreno, José M Álvarez, and Rodrigo A Gutiérrez. “Molecular Mechanisms Underlying Nitrate Responses in Plants.” Current Biology 32, no. 9 (2022): R433–39. https://doi.org/10.1016/j.cub.2022.03.022.
        11. Maldonado, Jonathan E, Alexis Gaete, Dinka Mandakovic, Constanza Aguado-Norese, Melissa Aguilar, Rodrigo A Gutiérrez, and Mauricio González. “Partners to Survive: Hoffmannseggia Doellii Root-Associated Microbiome at the Atacama Desert.” New Phytologist 234, no. 6 (June 2022): 2126–39. https://doi.org/10.1111/nph.18080.
        12. Mardones, Wladimir, Carlos A Villarroel, Valentina Abarca, Kamila Urbina, Tomás A Peña, Jennifer Molinet, Roberto F Nespolo, and Francisco A Cubillos. “Rapid Selection Response to Ethanol in Saccharomyces Eubayanus Emulates the Domestication Process under Brewing Conditions.” Microbial Biotechnology 15, no. 3 (2022): 967–84. https://doi.org/10.1111/1751-7915.13803.
        13. Marzol, Eliana, Cecilia Borassi, Mariana Carignani Sardoy, Philippe Ranocha, Ariel A Aptekmann, Mauro Bringas, Janice Pennington, et al. “Class III Peroxidases PRX01, PRX44, and PRX73 Control Root Hair Growth in Arabidopsis Thaliana.” International Journal of Molecular Sciences 23, no. 10 (2022). https://doi.org/10.3390/ijms23105375.
        14. Mejias, Carlos, Juan G Navedo, Pablo Sabat, Lida M Franco, Francisco Bozinovic, and Roberto F Nespolo. “Body Composition and Energy Savings by Hibernation: Lessons from the South American Marsupial Dromiciops Gliroides.” Physiological and Biochemical Zoology 95, no. 3 (2022): 239–50. https://doi.org/10.1086/719932.
        15. Molina, José Alejandro, Pablo Galaz-Davison, Elizabeth A Komives, Irina Artsimovitch, and César A Ramírez-Sarmiento. “Allosteric Couplings upon Binding of RfaH to Transcription Elongation Complexes.” Nucleic Acids Research, June 2022. https://doi.org/10.1093/nar/gkac453.
        16. Molinet, Jennifer, Kamila Urbina, Claudia Villegas, Valentina Abarca, Christian I Oporto, Pablo Villarreal, Carlos A Villarroel, Francisco Salinas, Roberto F Nespolo, and Francisco A Cubillos. “A Saccharomyces Eubayanus Haploid Resource for Research Studies.” Scientific Reports 12, no. 1 (2022): 5976–5976. https://doi.org/10.1038/s41598-022-10048-8.
        17. Mozzachiodi, Simone, Feng-Yan Bai, Petr Baldrian, Graham Bell, Kyria Boundy-Mills, Pietro Buzzini, Neža ?adež, et al. “Yeasts from Temperate Forests.” Yeast 39, no. 1–2 (January 2022): 4–24. https://doi.org/10.1002/yea.3699.
        18. Nespolo, Roberto F, Francisco E Fontúrbel, Carlos Mejias, Rodrigo Contreras, Paulina Gutierrez, Esteban Oda, Pablo Sabat, Catherine Hambly, John R Speakman, and Francisco Bozinovic. “A Mesocosm Experiment in Ecological Physiology: The Modulation of Energy Budget in a Hibernating Marsupial under Chronic Caloric Restriction.” Physiological and Biochemical Zoology 95, no. 1 (2022): 66–81. https://doi.org/10.1086/717760.
        19. Nespolo, Roberto F, Carlos Mejias, and Francisco Bozinovic. “Why Bears Hibernate? Redefining the Scaling Energetics of Hibernation.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1973 (2022): 20220456–20220456. https://doi.org/10.1098/rspb.2022.0456.
        20. Orlando, Contreras-López, Vidal Elena A, Riveras Eleodoro, Alvarez José M, Moyano Tomás C, Sparks Erin E, Medina Joaquín, et al. “Spatiotemporal Analysis Identifies ABF2 and ABF3 as Key Hubs of Endodermal Response to Nitrate.” Proceedings of the National Academy of Sciences 119, no. 4 (January 2022): e2107879119–e2107879119. https://doi.org/10.1073/pnas.2107879119.
        21. Pacheco, Javier Martínez, Philippe Ranocha, Luciana Kasulin, Corina M Fusari, Lucas Servi, Ariel. A Aptekmann, Victoria Berdion Gabarain, et al. “Apoplastic Class III Peroxidases PRX62 and PRX69 Promote Arabidopsis Root Hair Growth at Low Temperature.” Nature Communications 13, no. 1 (2022): 1310–1310. https://doi.org/10.1038/s41467-022-28833-4.
        22. Paula, Blázquez-Sánchez, Engelberger Felipe, Cifuentes-Anticevic Jerónimo, Sonnendecker Christian, Griñén Aransa, Reyes Javiera, Díez Beatriz, et al. “Antarctic Polyester Hydrolases Degrade Aliphatic and Aromatic Polyesters at Moderate Temperatures.” Applied and Environmental Microbiology 88, no. 1 (June 2022): e01842-21. https://doi.org/10.1128/AEM.01842-21.
        23. Quintero-Galvis, Julian F, Pablo Saenz-Agudelo, Guillermo C Amico, Soledad Vazquez, Aaron B A Shafer, and Roberto F Nespolo. “Genomic Diversity and Demographic History of the Dromiciops Genus (Marsupialia: Microbiotheriidae).” Molecular Phylogenetics and Evolution 168 (2022): 107405–107405. https://doi.org/10.1016/j.ympev.2022.107405.
        24. Rivera, Maira, Pablo Galaz-Davison, Ignacio Retamal-Farfán, Elizabeth A Komives, and César A Ramírez-Sarmiento. “Dimer Dissociation Is a Key Energetic Event in the Fold-Switch Pathway of KaiB.” Biophysical Journal 121, no. 6 (2022): 943–55. https://doi.org/10.1016/j.bpj.2022.02.012.
        25. Rojas, Vicente, Francisco Salinas, Andrés Romero, Luis F Larrondo, and Paulo Canessa. “Interactions between Core Elements of the Botrytis Cinerea Circadian Clock Are Modulated by Light and Different Protein Domains.” Journal of Fungi 8, no. 5 (2022). https://doi.org/10.3390/jof8050486.
        26. Saenz-Agudelo, Pablo, Lívia Peluso, Roberto Nespolo, Bernardo R Broitman, Pilar A Haye, and Marco A Lardies. “Population Genomic Analyses Reveal Hybridization and Marked Differences in Genetic Structure of Scurria Limpet Sister Species with Parapatric Distributions across the South Eastern Pacific.” Ecology and Evolution 12, no. 5 (2022): e8888–e8888. https://doi.org/10.1002/ece3.8888.
        27. Silva-Sanzana, Christian, Maria Victoria Gangas, Diego Zavala, and Francisca Blanco-Herrera. “A Recipe for Success: Three Key Strategies Used by Aphids and Pseudomonas Syringae to Colonize the Phyllosphere.” Microbial Ecology, 2022. https://doi.org/10.1007/s00248-022-01965-2.
        28. Sonnendecker, Christian, Juliane Oeser, P Konstantin Richter, Patrick Hille, Ziyue Zhao, Cornelius Fischer, Holger Lippold, et al. “Low Carbon Footprint Recycling of Post-Consumer PET Plastic with a Metagenomic Polyester Hydrolase.” ChemSusChem 15, no. 9 (2022): e202101062–e202101062. https://doi.org/10.1002/cssc.202101062.
        29. Uribe, Felipe, Carlos Henríquez-Valencia, Anita Arenas-M, Joaquín Medina, Elena A Vidal, and Javier Canales. “Evolutionary and Gene Expression Analyses Reveal New Insights into the Role of LSU Gene-Family in Plant Responses to Sulfate-Deficiency.” Plants 11, no. 12 (2022). https://doi.org/10.3390/plants11121526.
        30. Vaishnav, Eeshit Dhaval, Carl G de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis, Dawn A Thompson, Joshua Z Levin, Francisco A Cubillos, and Aviv Regev. “The Evolution, Evolvability and Engineering of Gene Regulatory DNA.” Nature 603, no. 7901 (2022): 455–63. https://doi.org/10.1038/s41586-022-04506-6.
        31. Villarreal, Pablo, Pablo A Quintrel, Sebastián Olivares-Muñoz, José J Ruiz, Roberto F Nespolo, and Francisco A Cubillos. “Identification of New Ethanol-Tolerant Yeast Strains with Fermentation Potential from Central Patagonia.” Yeast 39, no. 1–2 (2022): 128–40. https://doi.org/10.1002/yea.3662.
        32. Villarroel, Carlos A, Angélica González-González, Jeniffer K Alvarez-Baca, Pablo Villarreal, Gabriel I Ballesteros, Christian C Figueroa, Francisco A Cubillos, and Claudio C Ramírez. “Genome Sequencing of a Predominant Clonal Lineage of the Grain Aphid Sitobion Avenae.” Insect Biochemistry and Molecular Biology 143 (2022): 103742–103742. https://doi.org/10.1016/j.ibmb.2022.103742.
        33. Zavala, Diego, Isabel Fuenzalida, María Victoria Gangas, Micaela Peppino Margutti, Claudia Bartoli, Fabrice Roux, Claudio Meneses, Ariel Herrera-Vásquez, and Francisca Blanco-Herrera. “Molecular and Genomic Characterization of the Pseudomonas Syringae Phylogroup 4: An Emerging Pathogen of Arabidopsis Thaliana and Nicotiana Benthamiana.” Microorganisms 10, no. 4 (2022). https://doi.org/10.3390/microorganisms10040707.

 

2021

        1. Ötvös K, Marconi M, Vega A, O’Brien J, Johnson A, Abualia R, Antonielli L, Montesinos JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A, Friml J, Gutiérrez RA, Wabnik K, Benková E. Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport [Article]
        2. Vega A, Fredes I, O’Brien J, Shen Z, Ötvös K, Abualia R, Benkova E, Briggs SP, Gutiérrez RA. Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture [Article]
        3. Zárate, R. V, Arancibia, D., Fernández, A., Signorelli, J. R., Larrondo, L. F., Andrés, M. E., and Zamorano, P. Optimization of the Light-On system in a lentiviral platform to a light-controlled expression of genes in neurons. [Article]
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2020

 

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      2. Swift, J., Alvarez, J. M., Araus, V., Gutiérrez, R. A., and Coruzzi, G. M. 2020. Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics  underlie plant growth rates. Proc. Natl. Acad. Sci. U. S. A. 117:12531–12540 [Article]
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      6. Molinet, J., Salinas, F., Guillamón, J. M., and Martínez, C. 2020. GTR1 Affects Nitrogen Consumption and TORC1 Activity in Saccharomyces cerevisiae  Under Fermentation Conditions. Front. Genet. 11:519  [Article]
      7. Leiva-Ampuero, A., Agurto, M., Matus, J. T., Hoppe, G., Huidobro, C., Inostroza-Blancheteau, C., Reyes-Díaz, M., Stange, C., Canessa, P., and Vega, A. 2020. Salinity impairs photosynthetic capacity and enhances carotenoid-related gene  expression and biosynthesis in tomato (Solanum lycopersicum L. cv. Micro-Tom). PeerJ. 8:e9742 [Article]
      8. Herrera-Vásquez, A., Fonseca, A., Ugalde, J. M., Lamig, L., Seguel, A., Moyano, T. C., Gutiérrez, R. A., Salinas, P., Vidal, E. A., and Holuigue, L. 2020. TGA class II transcription factors are essential to restrict oxidative stress in response to UV-B stress in Arabidopsis. J. Exp. Bot. [Article]
      9. Sede, A. R., Wengier, D. L., Borassi, C., Estevez, J. M., and Muschietti, J. P. 2020. Imaging and Analysis of the Content of Callose, Pectin, and Cellulose in the Cell Wall of Arabidopsis Pollen Tubes Grown In Vitro BT  – Pollen and Pollen Tube Biology: Methods and Protocols. Pages 233–242 in: A. Geitmann, ed. Springer US, New York, NY. [Article]
      10. Mandakovic, D., Pulgar, R., Maldonado, J., Mardones, W., González, M., Cubillos, F. A., and Cambiazo, V. 2020. Fungal Diversity Analysis of Grape Musts from Central Valley-Chile and  Characterization of Potential New Starter Cultures. Microorganisms. 8 [Article]
      11. Moreno, S., Canales, J., Hong, L., Robinson, D., Roeder, A. H. K., and Gutiérrez, R. A. 2020. Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell  Division in Arabidopsis thaliana. Curr. Biol. 30:1988-2000.e3 [Article]
      12. Brooks, M. D., Juang, C.-L., Katari, M. S., Alvarez, J. M., Pasquino, A., Shih, H.-J., Huang, J., Shanks, C., Cirrone, J., and Coruzzi, G. M. 2020. ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks. Plant Physiol. [Article]
      13. Silva-Sanzana, C., Estevez, J. M., and Blanco-Herrera, F. 2020. Influence of cell wall polymers and their modifying enzymes during plant–aphid interactions. J. Exp. Bot. 71:3854–3864 [Article]
      14. Libkind, D., Peris, D., Cubillos, F. A., Steenwyk, J. L., Opulente, D. A., Langdon, Q. K., Rokas, A., and Hittinger, C. T. 2020. Into the wild: new yeast genomes from natural environments and new tools for their  analysis. FEMS Yeast Res. 20 [Article]
      15. Rezende, E. L., Bacigalupe, L. D., Nespolo, R. F., and Bozinovic, F. 2020. Shrinking dinosaurs and the evolution of endothermy in birds. Sci. Adv. 6:eaaw4486 [Article]
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      17. Vasquez-Montaño, E., Hoppe, G., Vega, A., Olivares-Yañez, C., and Canessa, P. 2020. Defects in the Ferroxidase That Participates in the Reductive Iron Assimilation  System Results in Hypervirulence in Botrytis Cinerea. MBio. 11 [Article]
      18. Figueroa, D., Rojas, V., Romero, A., Larrondo, L. F., and Salinas, F. 2020. The rise and shine of yeast optogenetics. Yeast. n/a [Article]
      19. Guajardo, L.; Aguilar, R.; Bustos, F.J.; Nardocci, G.; Gutiérrez, R.A.; van Zundert, B.; Montecino, M. 2020. Downregulation of the Polycomb-Associated  Methyltransferase Ezh2 during Maturation of Hippocampal Neurons Is Mediated by MicroRNAs Let-7 and miR-124. Int. J. Mol. Sci. 21 [Article]
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      23. Riveras, E., Azocar, L., Moyano, T. C., Ocares, M., Molina, H., Romero, D., Roa, J. C., Valbuena, J. R., Gutiérrez, R. A., and Miquel, J. F. 2020. Transcriptomic profiles reveal differences in zinc metabolism, inflammation, and  tight junction proteins in duodenum from cholesterol gallstone subjects. Sci. Rep. 10:7448 [Article]
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      27. Mardones, W., Villarroel, C. A., Krogerus, K., Tapia, S. M., Urbina, K., Oporto, C. I., O’Donnell, S., Minebois, R., Nespolo, R., Fischer, G., Querol, A., Gibson, B., and Cubillos, F. A. 2020. Molecular profiling of beer wort fermentation diversity across natural Saccharomyces  eubayanus isolates. Microb. Biotechnol. 13:1012–1025 [Article]
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      35. Devia, J., Bastías, C., Kessi-Pérez, E. I., Villarroel, C. A., De Chiara, M., Cubillos, F. A., Liti, G., Martínez, C., and Salinas, F. 2020. Transcriptional Activity and Protein Levels of Horizontally Acquired Genes in Yeast  Reveal Hallmarks of Adaptation to Fermentative Environments. Front. Genet. 11:293 [Article]
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      37. Rojas V., Salinas F., Guzman-Zamora L., Romero A., Delgado V., L. L. . 2020. 12 Exploiting Fungal Photobiology as a Source of Novel Bio-blocks for Optogenetic Systems. in: Benz J.P., Schipper K. (eds) Genetics and Biotechnology. The Mycota (A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research), [Article]
      38. Pérez-Palma, E., Bustos, B. I., Lal, D., Buch, S., Azocar, L., Toliat, M. R., Lieb, W., Franke, A., Hinz, S., Burmeister, G., von Shönfels, W., Schafmayer, C., Ahnert, P., Völzke, H., Völker, U., Homuth, G., Lerch, M. M., Puschel, K., Gutiérrez, R. A., Hampe, J., Nürnberg, P., Miquel, J. F., and De Ferrari, G. V. 2020. Copy number variants in lipid metabolism genes are associated with gallstones  disease in men. Eur. J. Hum. Genet. 28:264–273 [Article]
      39. Li, L., Li, B., Xie, C., Zhang, T., Borassi, C., Estevez, J. M., Li, X., and Liu, X. 2020. Arabidopsis RAD23B regulates pollen development by mediating degradation of KRP1. J. Exp. Bot. 71:4010–4019 [Article]
      40. Zúñiga, L. M., Andrade, J., Fábrega-Guerén, F., Orihuela, P. A., Velasquez, E. V, Vidal, E. A., Gutiérrez, R. A., Morales, P., Gómez-Silva, B., and Croxatto, H. B. Mating induces early transcriptional response in the rat endosalpinx: The role of TNF and RA. Reproduction. :REP-20-0190 [Article]

2019

 

      1. Naulin, P. A., Armijo, G. I., Vega, A. S., Tamayo, K. P., Gras, D. E., de la Cruz, J., and Gutiérrez, R. A. 2020. Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis  thaliana. Plant Cell Physiol. 61:342–352 [Article]
      2. Fernandez-Gomez, B., Maldonado, J., Mandakovic, D., Gaete, A., Gutierrez, R. A., Maass, A., Cambiazo, V., and Gonzalez, M. 2019. Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils. Sci. Rep. 9:1042 [Article]
      3. Kessi-Perez, E. I., Salinas, F., Molinet, J., Gonzalez, A., Muniz, S., Guillamon, J. M., Hall, M. N., Larrondo, L. F., and Martinez, C. 2019. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. 36:65–74 [Article]
      4. Oporto, C. I., Villarroel, C. A., Tapia, S. M., Garcia, V., and Cubillos, F. A. 2019. Distinct Transcriptional Changes in Response to Patulin Underlie Toxin Biosorption Differences in Saccharomyces Cerevisiae. Toxins (Basel). 11 [Article]
      5. Cruz, N., Méndez, T., Ramos, P., Urbina, D., Vega, A., Gutiérrez, R. A., Moya-León, M. A., and Herrera, R. 2019. Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy. Sci. Rep. 9:18981 [Article]
      6. Vega, A., O’Brien, J. A., and Gutiérrez, R. A. 2019. Nitrate and hormonal signaling crosstalk for plant growth and development. Curr. Opin. Plant Biol. 52:155–163 [Article]
      7. Horta, M. A. C., Thieme, N., Gao, Y., Burnum-Johnson, K. E., Nicora, C. D., Gritsenko, M. A., Lipton, M. S., Mohanraj, K., de Assis, L. J., Lin, L., Tian, C., Braus, G. H., Borkovich, K. A., Schmoll, M., Larrondo, L. F., Samal, A., Goldman, G. H., and Benz, J. P. 2019. Broad Substrate-Specific Phosphorylation Events Are Associated With the Initial  Stage of Plant Cell Wall Recognition in Neurospora crassa. Front. Microbiol. 10:2317 [Article]
      8. Wood, J. R., Díaz, F. P., Latorre, C., Wilmshurst, J. M., Burge, O. R., González, F., and Gutiérrez, R. A. 2019. Ancient parasite DNA from late Quaternary Atacama Desert rodent middens. Quat. Sci. Rev. 226:106031 [Article]
      9. Villalobos-Cid, M., Salinas, F., Kessi-Pérez, E. I., De Chiara, M., Liti, G., Inostroza-Ponta, M., and Martínez, C. 2019. Comparison of Phylogenetic Tree Topologies for Nitrogen Associated Genes Partially  Reconstruct the Evolutionary History of Saccharomyces cerevisiae. Microorganisms. 8 [Article]
      10. Sabat, P., Bozinovic, F., Contreras-Ramos, C., Nespolo, R. F., Newsome, S. D., Quirici, V., Maldonado, K., Peña-Villalobos, I., Ramirez-Otarola, N., and Sanchez-Hernandez, J. C. 2019. The interplay between ambient temperature and salt intake affects oxidative status  and immune responses in a ubiquitous Neotropical passerine, the rufous-collared sparrow. Comp. Biochem. Physiol. A. Mol. Integr. Physiol. 234:50–59 [Article]
      11. Silva-Sanzana, C., Estevez, J. M., and Blanco-Herrera, F. 2019. Influence of cell wall polymers and their modifying enzymes during plant-aphid interactions. J. Exp. Bot. [Article]
      12. Nuñez-Lillo, G., Balladares, C., Pavez, C., Urra, C., Sanhueza, D., Vendramin, E., Dettori, M. T., Arús, P., Verde, I., Blanco-Herrera, F., Campos-Vargas, R., and Meneses, C. 2019. High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing. Sci. Hortic. (Amsterdam). 257:108734 [Article]
      13. Silva-Sanzana, C., Celiz-Balboa, J., Garzo, E., Marcus, S. E., Parra-Rojas, J. P., Rojas, B., Olmedo, P., Rubilar Romero, M. A., Rios, I., Chorbadjian, R. A., Fereres, A., Knox, J. P., Saez-Aguayo, S., and Blanco-Herrera, F. 2019.  Pectinmethyesterases Modulate Plant Homogalacturonan Status in Defenses Against the Aphid Myzus persicae. Plant Cell. [Article]
      14. Pollak, B., Cerda, A., Delmans, M., Alamos, S., Moyano, T., West, A., Gutierrez, R. A., Patron, N. J., Federici, F., and Haseloff, J. 2019. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytol. 222:628–640 [Article]
      15. Brooks, M. D., Cirrone, J., Pasquino, A. V, Alvarez, J. M., Swift, J., Mittal, S., Juang, C.-L., Varala, K., Gutierrez, R. A., Krouk, G., Shasha, D., and Coruzzi, G. M. 2019. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nat. Commun. 10:1569 [Article]
      16. Falter-Braun, P., Brady, S., Gutierrez, R. A., Coruzzi, G. M., and Krouk, G. 2019. iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community. Mol. Plant. 12:727–730 [Article]
      17. Alvarez, J. M., Moyano, T. C., Zhang, T., Gras, D. E., Herrera, F. J., Araus, V., O’Brien, J. A., Carrillo, L., Medina, J., Vicente-Carbajosa, J., Jiang, J., and Gutiérrez, R. A. 2019. Local changes in chromatin accessibility and transcriptional networks underlying the nitrate response in Arabidopsis roots. Mol. Plant. [Article]
      18. Fredes, I., Moreno, S., Diaz, F. P., and Gutierrez, R. A. 2019. Nitrate signaling and the control of Arabidopsis growth and development. Curr. Opin. Plant Biol. 47:112–118 [Article]
      19. Pérez-Palma, E., Bustos, B. I., Lal, D., Buch, S., Azocar, L., Toliat, M. R., Lieb, W., Franke, A., Hinz, S., Burmeister, G., von Shönfels, W., Schafmayer, C., Ahnert, P., Völzke, H., Völker, U., Homuth, G., Lerch, M. M., Puschel, K., Gutiérrez, R. A., Hampe, J., Nürnberg, P., Francisco Miquel, J., and De Ferrari, G. V. 2019. Copy number variants in lipid metabolism genes are associated with gallstones disease in men. Eur. J. Hum. Genet. [Article]
      20. Bustos, B. I., Perez-Palma, E., Buch, S., Azocar, L., Riveras, E., Ugarte, G. D., Toliat, M., Nurnberg, P., Lieb, W., Franke, A., Hinz, S., Burmeister, G., von Schonfels, W., Schafmayer, C., Volzke, H., Volker, U., Homuth, G., Lerch, M. M., Santos, J. L., Puschel, K., Bambs, C., Roa, J. C., Gutierrez, R. A., Hampe, J., De Ferrari, G. V, and Miquel, J. F. 2019. Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry. Sci. Rep. 9:772 [Article]
      21. Vidal, E. A., Moyano, T. C., Bustos, B. I., Perez-Palma, E., Moraga, C., Riveras, E., Montecinos, A., Azocar, L., Soto, D. C., Vidal, M., Di Genova, A., Puschel, K., Nurnberg, P., Buch, S., Hampe, J., Allende, M. L., Cambiazo, V., Gonzalez, M., Hodar, C., Montecino, M., Munoz-Espinoza, C., Orellana, A., Reyes-Jara, A., Travisany, D., Vizoso, P., Moraga, M., Eyheramendy, S., Maass, A., De Ferrari, G. V, Miquel, J. F., and Gutierrez, R. A. 2019. Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans. Sci. Rep. 9:2132 [Article]
      22. Ramírez-Cáceres, G. E., Moya-Hernández, M. G., Quilodrán, M., Nespolo, R. F., Ceballos, R., Villagra, C. A., and Ramírez, C. C. 2019. Harbouring the secondary endosymbiont Regiella insecticola increases predation risk and reproduction in the cereal aphid Sitobion avenae. J. Pest Sci. (2004). 92:1039–1047 [Article]
      23. Molinet, J., Cubillos, F. A., Salinas, F., Liti, G., and Martinez, C. 2019. Genetic variants of TORC1 signaling pathway affect nitrogen consumption in Saccharomyces cerevisiae during alcoholic fermentation. PLoS One. 14:e0220515 [Article]
      24. Kessi-Pérez, E. I., Salinas, F., González, A., Su, Y., Guillamón, J. M., Hall, M. N., Larrondo, L. F., and Martínez, C. 2019. KAE1 Allelic Variants Affect TORC1 Activation and Fermentation Kinetics in Saccharomyces cerevisiae  . Front. Microbiol.  . 10:1686 [Article]
      25. Diaz, F. P., Latorre, C., Carrasco-Puga, G., Wood, J. R., Wilmshurst, J. M., Soto, D. C., Cole, T. L., and Gutierrez, R. A. 2019. Multiscale climate change impacts on plant diversity in the Atacama Desert. Glob. Chang. Biol. 25:1733–1745 [Article]
      26. Salazar, M. P., Valenzuela, D., Tironi, M., and Gutiérrez, R. A. 2019. The ambivalent regulator: the construction of a regulatory style for genetically modified crops in Chile. Tapuya Lat. Am. Sci. Technol. Soc. 0:1–21 [Article]
      27. Cubillos, F. A., Gibson, B., Grijalva-Vallejos, N., Krogerus, K., and Nikulin, J. 2019. Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers. Yeast. [Article]
      28. Mandakovic, D., Rojas, C., Maldonado, J., Latorre, M., Travisany, D., Delage, E., and … 2018. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci. Rep. 8:5875 [Article]
      29. Castillo, F. M., Canales, J., Claude, A., and Calderini, D. F. 2018. Expansin genes expression in growing ovaries and grains of sunflower are tissue-specific and associate with final grain weight. BMC Plant Biol. 18:327 [Article]
      30. Pollak, B., Cerda, A., Delmans, M., Álamos, S., Moyano, T., West, A., Gutiérrez, R. A., Patron, N., Federici, F., and Haseloff, J. 2018. Loop Assembly: a simple and open system for recursive fabrication of DNA circuits. bioRxiv. :247593[Article]
      31. Wood, J. R., Diaz, F. P., Latorre, C., Wilmshurst, J. M., Burge, O. R., and Gutierrez, R. A. 2018. Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile. Sci. Rep. 8:17208 [Article]
      32. Nespolo, R., Gaitán-Espitia, J., Quintero-Galvis, J., Fernandez, F., Silva, A., Molina, C., Storey, K., and Bozinovic, F. 2018. A functional transcriptomics analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of hibernation. Mol. Ecol. 10:1–3 [Article]
      33. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2018. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8 [Article]
      34. Rojas-Aedo, J. F., Gil-Durán, C., Goity, A., Vaca, I., Levicán, G., Larrondo, L. F., and Chávez, R. 2018. The developmental regulator Pcz1 affects the production of secondary metabolites in the filamentous fungus Penicillium roqueforti. Microbiol. Res. 212–213:67–74 [Article]
      35. Larrondo, L., and Canessa, P. 2018. The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis Luis. in: Current Topics in Microbiology and Immunology, Khan, A., Montenegro-Montero, A., and Mathelier, A. 2018. Put science first and formatting later. EMBO Rep. 19 [Article]
      36. Kan, A., Del Valle, I., Rudge, T., Federici, F., and Haseloff, J. 2018. Intercellular adhesion promotes clonal mixing in growing bacterial populations. J. R. Soc. Interface. 15:20180406 [Article]
      37. Arraño-Salinas, P., Domínguez-Figueroa, J., Herrera-Vásquez, A., Zavala, D., Medina, J., Vicente-Carbajosa, J., Meneses, C., Canessa, P., Moreno, A. A., and Blanco-Herrera, F. 2018. WRKY7, -11 and -17 transcription factors are modulators of the bZIP28 branch of the unfolded protein response during PAMP-triggered immunity in Arabidopsis thaliana. Plant Sci. :0–1 [Article]
      38. Contreras-López, O., Moyano, T. C., Soto, D. C., and Gutiérrez, R. A. 2018. Step-by-step construction of gene co-expression networks from high-throughput Arabidopsis RNA sequencing data. Methods Mol. Biol. 1761:275–301 [Article]
      39. Henríquez-Valencia, C., Arenas-M, A., Medina, J., and Canales, J. 2018. Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana. Front. Plant Sci. 9:1–20[Article]
      40. Salinas-Grenet, H., Herrera-Vásquez, A., Parra, S., Cortez, A., Gutiérrez, L., Pollmann, S., León, G., and Blanco-Herrera, F. 2018. Modulation of auxin levels in pollen grains affects stamen development and anther dehiscence in Arabidopsis. Int. J. Mol. Sci. 19:1–13 [Article]
      41. Quintero-Galvis, J. F., Paleo-López, R., Solano-Iguaran, J. J., Poupin, M. J., Ledger, T., Gaitan-Espitia, J. D., Anto?, A., Travisano, M., and Nespolo, R. F. 2018. Exploring the evolution of multicellularity in Saccharomyces cerevisiae under bacteria environment: An experimental phylogenetics approach. Ecol. Evol. 8:4619–4630 [Article]
      42. Brice, C., Cubillos, F. A., Dequin, S., Camarasa, C., and Martinez, C. 2018. Adaptability of the Saccharomyces cerevisiae yeasts to wine fermentation conditions relies on their strong ability to consume nitrogen. PLoS One. 13:e0192383 [Article]
      43. Zúñiga, A., Fuente, F. D. La, Federici, F., Lionne, C., Bônnet, J., De Lorenzo, V., and González, B. 2018. An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 to Stimulate Plant Growth. ACS Synth. Biol. 7:1519–1527 [Article]
      44. Kessi-Pérez, E. I., Salinas, F., Molinet, J., González, A., Muñiz, S., Guillamón, J. M., Hall, M. N., Larrondo, L. F., and Martínez, C. 2018. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. [Article]
      45. Nespolo, R. F., Gaitan-Espitia, J. D., Quintero-Galvis, J. F., Fernandez, F. V, Silva, A. X., Molina, C., Storey, K. B., and Bozinovic, F. 2018. A functional transcriptomic analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of protective functions during hibernation. Mol. Ecol. 27:4489–4500 [Article]
      46. Boni, A. C., Ambrósio, D. L., Cupertino, F. B., Montenegro-Montero, A., Virgilio, S., Freitas, F. Z., Corrocher, F. A., Gonçalves, R. D., Yang, A., Weirauch, M. T., Hughes, T. R., Larrondo, L. F., and Bertolini, M. C. 2018. Neurospora crassa developmental control mediated by the FLB-3 transcription factor. Fungal Biol. 122:570–582 [Article]
      47. Salinas, F., Rojas, V., Delgado, V., López, J., Agosin, E., and Larrondo, L. F. 2018. Fungal Light-Oxygen-Voltage Domains for Optogenetic Control of Gene Expression and Flocculation in Yeast. MBio. 9:e00626-18 [Article]
      48. Muñoz-Llanos, M., García-Pérez, M. A., Xu, X., Tejos-Bravo, M., Vidal, E. A., Moyano, T. C., Gutiérrez, R. A., Aguayo, F. I., Pacheco, A., García-Rojo, G., Aliaga, E., Rojas, P. S., Cidlowski, J. A., and Fiedler, J. L. 2018.  MicroRNA Profiling and Bioinformatics Target Analysis in Dorsal Hippocampus of Chronically Stressed Rats: Relevance to Depression Pathophysiology. Front. Mol. Neurosci. 11:1–18 [Article]
      49. Cifuentes-Esquivel, N., Celiz-Balboa, J., Henriquez-Valencia, C., Mitina, I., Arraño-Salinas, P., Moreno, A. A., Meneses, C., Blanco-Herrera, F., and Orellana, A. 2018. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem. 119:6857–6868 [Article]
      50. Tapia, S. M., Cuevas, M., Abarca, V., Delgado, V., Rojas, V., García, V., Brice, C., Martínez, C., Salinas, F., Larrondo, L. F., and Cubillos, F. A. 2018. GPD1 and ADH3 natural variants underlie glycerol yield differences in wine fermentation. Front. Microbiol. 9:1–13 [Article]
      51. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2017. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8:2173 [Article]

2018

      1. Mandakovic, D., Rojas, C., Maldonado, J., Latorre, M., Travisany, D., Delage, E., and … 2018. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci. Rep. 8:5875 [Article]
      2. Castillo, F. M., Canales, J., Claude, A., and Calderini, D. F. 2018. Expansin genes expression in growing ovaries and grains of sunflower are tissue-specific and associate with final grain weight. BMC Plant Biol. 18:327 [Article]
      3. Pollak, B., Cerda, A., Delmans, M., Álamos, S., Moyano, T., West, A., Gutiérrez, R. A., Patron, N., Federici, F., and Haseloff, J. 2018. Loop Assembly: a simple and open system for recursive fabrication of DNA circuits. bioRxiv. :247593 [Article]
      4. Wood, J. R., Diaz, F. P., Latorre, C., Wilmshurst, J. M., Burge, O. R., and Gutierrez, R. A. 2018. Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile. Sci. Rep. 8:17208 [Article]
      5. Nespolo, R., Gaitán-Espitia, J., Quintero-Galvis, J., Fernandez, F., Silva, A., Molina, C., Storey, K., and ozinovic, F. 2018. A functional transcriptomics analysis in the relict marsupial Dromiciops gliroides reveals adaptive regulation of hibernation. Mol. Ecol. 10:1–3 [Article]
      6. Canales, J., Henriquez-Valencia, C., and Brauchi, S. 2018. The Integration of Electrical Signals Originating in the Root of Vascular Plants. Front. Plant Sci. 8 [Article]
      7. Rojas-Aedo, J. F., Gil-Durán, C., Goity, A., Vaca, I., Levicán, G., Larrondo, L. F., and Chávez, R. 2018. The developmental regulator Pcz1 affects the production of secondary metabolites in the filamentous fungus Penicillium roqueforti. Microbiol. Res. 212–213:67–74 [Article]
      8. Larrondo, L., and Canessa, P. 2018. The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis Luis. in: Current Topics in Microbiology and Immunology [Article]
      9.  Khan, A., Montenegro-Montero, A., and Mathelier, A. 2018. Put science first and formatting later. EMBO Rep. 19 [Article]
      10. Kan, A., Del Valle, I., Rudge, T., Federici, F., and Haseloff, J. 2018. Intercellular adhesion promotes clonal mixing in growing bacterial populations. J. R. Soc. Interface. 15:20180406 [Article]
      11. Arraño-Salinas, P., Domínguez-Figueroa, J., Herrera-Vásquez, A., Zavala, D., Medina, J., Vicente-Carbajosa, J., Meneses, C., Canessa, P., Moreno, A. A., and Blanco-Herrera, F. 2018. WRKY7, -11 and -17 transcription factors are modulators of the bZIP28 branch of the unfolded protein response during PAMP-triggered immunity in Arabidopsis thaliana. Plant Sci. :0–1 [Article]
      12. Contreras-López, O., Moyano, T. C., Soto, D. C., and Gutiérrez, R. A. 2018. Step-by-step construction of gene co-expression networks from high-throughput Arabidopsis RNA sequencing data. Methods Mol. Biol. 1761:275–301 [Article]
      13. Henríquez-Valencia, C., Arenas-M, A., Medina, J., and Canales, J. 2018. Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana. Front. Plant Sci. 9:1–20 [Article]
      14. Salinas-Grenet, H., Herrera-Vásquez, A., Parra, S., Cortez, A., Gutiérrez, L., Pollmann, S., León, G., and Blanco-Herrera, F. 2018. Modulation of auxin levels in pollen grains affects stamen development and anther dehiscence in Arabidopsis. Int. J. Mol. Sci. 19:1–13 [Article]
      15. Quintero-Galvis, J. F., Paleo-López, R., Solano-Iguaran, J. J., Poupin, M. J., Ledger, T., Gaitan-Espitia, J. D., Anto?, A., Travisano, M., and Nespolo, R. F. 2018. Exploring the evolution of multicellularity in Saccharomyces cerevisiae under bacteria environment: An experimental phylogenetics approach. Ecol. Evol. 8:4619–4630 [Article]
      16. Brice, C., Cubillos, F. A., Dequin, S., Camarasa, C., and Martinez, C. 2018. Adaptability of the Saccharomyces cerevisiae yeasts to wine fermentation conditions relies on their strong ability to consume nitrogen. PLoS One. 13:e0192383[Article]
      17. Zúñiga, A., Fuente, F. D. La, Federici, F., Lionne, C., Bônnet, J., De Lorenzo, V., and González, B. 2018. An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 to Stimulate Plant Growth. ACS Synth. Biol. 7:1519–1527 [Article]
      18. Kessi-Pérez, E. I., Salinas, F., Molinet, J., González, A., Muñiz, S., Guillamón, J. M., Hall, M. N., Larrondo, L. F., and Martínez, C. 2018. Indirect monitoring of TORC1 signalling pathway reveals molecular diversity among different yeast strains. Yeast. [Article]
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